Jatropha Genome Database

JcCB0008631.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0008631.30 + phase: 0 /partial
         (197 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01011172001 assembled CDS                                       221   2e-58

>GSVIVT01011172001 assembled CDS
          Length = 227

 Score =  221 bits (563), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 100/134 (74%), Positives = 117/134 (87%)

Query: 64  PSMAIGGLGDTGTGSTVNIDFCASCSYRGTAITMKNMLETQFPGINIVLANYPPSLPKRL 123
           P+    G+G  G G+TVNI+FC+SCSYRG A+TMKNMLE+QFPG+ +VLANYPP LPKRL
Sbjct: 52  PTQKESGIGGIGFGNTVNINFCSSCSYRGNAVTMKNMLESQFPGVTVVLANYPPPLPKRL 111

Query: 124 LSKVVPVFQFGIIGLIMGGEQIFPKLGFAVPPSWYYSLRANRFGSIASTWLFGNFIQSFL 183
           LSKVVPV Q G+IG++M GEQIFP+LGF  PP WYYSLRANRFG+I++TWL GNF+QSFL
Sbjct: 112 LSKVVPVVQIGVIGIVMAGEQIFPRLGFIAPPPWYYSLRANRFGTISTTWLLGNFLQSFL 171

Query: 184 QSSGAFEVYCNGEL 197
           QSSGAFEVYCNGEL
Sbjct: 172 QSSGAFEVYCNGEL 185