Jatropha Genome Database

JcCB0008631.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0008631.20 + phase: 0 /partial
         (245 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01003683001 assembled CDS                                        49   2e-06

>GSVIVT01003683001 assembled CDS
          Length = 379

 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 35/60 (58%)

Query: 148 GKKREREPMEEMVAAVKVLGDGFVRMEQMKXXXXXXXXXXXXXXXXXXXXXILESQQHIV 207
           G KRE +P+ EMV+++++LG+GFV+ME+MK                     +LESQQ IV
Sbjct: 298 GIKRETDPISEMVSSIRLLGEGFVKMEKMKMDMAREIEKMRMEMEMKRSEMLLESQQQIV 357