Jatropha Genome Database

JcCB0008441.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0008441.10 - phase: 0 
         (417 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01030112001 assembled CDS                                       687   0.0  
GSVIVT01007332001 assembled CDS                                       655   0.0  
GSVIVT01028557001 assembled CDS                                       197   6e-51
GSVIVT01029062001 assembled CDS                                       195   3e-50
GSVIVT01037169001 assembled CDS                                       149   2e-36
GSVIVT01037164001 assembled CDS                                       147   7e-36
GSVIVT01037163001 assembled CDS                                       129   4e-30
GSVIVT01037168001 assembled CDS                                       127   1e-29
GSVIVT01037175001 assembled CDS                                        89   3e-18

>GSVIVT01030112001 assembled CDS
          Length = 404

 Score =  687 bits (1772), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 336/392 (85%), Positives = 364/392 (92%)

Query: 26  DVCIVGVARTPMGGFLGTLSSLPATKLGSIAIEAALKRAHVDPSLVQEVFFGNVLSANLG 85
           DVCIVGVARTPMGGFLGTLSSL ATKLGSIAIEAALKRA+VD SLVQEVFFGNVLSANLG
Sbjct: 13  DVCIVGVARTPMGGFLGTLSSLSATKLGSIAIEAALKRANVDASLVQEVFFGNVLSANLG 72

Query: 86  QAPARQAALGAGISNSVVCTTVNKVCASGMKATMLAAQSIQLGINDVVVAGGMESMSNTP 145
           QAPARQAALGAGI NSVVCTT+NKVCASGMKATMLAAQSIQLG+ND+VV+GGMESMSN P
Sbjct: 73  QAPARQAALGAGIPNSVVCTTINKVCASGMKATMLAAQSIQLGVNDIVVSGGMESMSNVP 132

Query: 146 KYLAEARKGSRLGHDSLVDGMLKDGLWDVYNDVGMGSCAEICADNHSITREDQDNYAIQS 205
           KYLAEARKGSR GHDSLVDGMLKDGLWDVY+D GMG CAE+CADNH I+RE+QD YAI S
Sbjct: 133 KYLAEARKGSRFGHDSLVDGMLKDGLWDVYSDTGMGVCAELCADNHVISREEQDAYAIHS 192

Query: 206 FERGIAAQEGGAFAWEIVPVEVSGGRGKPSTIIDRDEGIGKFDPVKLRKLRPSFKQDGGT 265
           FERGIAAQ+GGAFAWEIVPVEVSGGRG+PSTI+D+DEG+GKFDPVKL+KLRPSFK++GG+
Sbjct: 193 FERGIAAQDGGAFAWEIVPVEVSGGRGRPSTIVDKDEGLGKFDPVKLKKLRPSFKENGGS 252

Query: 266 VTAGNASSISDGAAALVLVSGETALKLGLQVIAKITGYADAAQAPELFTTAPALAIPKAL 325
           VTAGNASSISDGAAALVLVSGE AL+LGL VIAKI GYADAAQAPELFTTAPALAIPKA+
Sbjct: 253 VTAGNASSISDGAAALVLVSGEKALQLGLSVIAKIAGYADAAQAPELFTTAPALAIPKAI 312

Query: 326 SSAGLDASQVDYYEINEAFAVVALSNQKLLGLNPEKVNVHGGAVSLGHPLGCSGARILVT 385
           S+AGL+ASQ+DYYEINEAFAVVAL+NQKLLGL+PEKVNVHGGAVSLGHPLGCSGARILVT
Sbjct: 313 SNAGLEASQIDYYEINEAFAVVALANQKLLGLSPEKVNVHGGAVSLGHPLGCSGARILVT 372

Query: 386 LLGVLRQRXXXXXXXXXXXXXXXASALVLELL 417
           LLGVLRQ+               ASALV+EL+
Sbjct: 373 LLGVLRQKDGKYGVGGVCNGGGGASALVVELV 404


>GSVIVT01007332001 assembled CDS
          Length = 411

 Score =  655 bits (1691), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 321/392 (81%), Positives = 352/392 (89%), Gaps = 1/392 (0%)

Query: 26  DVCIVGVARTPMGGFLGTLSSLPATKLGSIAIEAALKRAHVDPSLVQEVFFGNVLSANLG 85
           DVCIVGVARTPMGGFLG LSSL ATKLGSIAI  AL+RA++DPSLVQEVFFGNVLSANLG
Sbjct: 11  DVCIVGVARTPMGGFLGFLSSLSATKLGSIAIRGALRRANIDPSLVQEVFFGNVLSANLG 70

Query: 86  QAPARQAALGAGISNSVVCTTVNKVCASGMKATMLAAQSIQLGINDVVVAGGMESMSNTP 145
           QAPARQAALGAGI NSVVCTT+NKVCASGMKA M AAQSIQLG+NDVVVAGGMESMSN P
Sbjct: 71  QAPARQAALGAGIPNSVVCTTINKVCASGMKAIMFAAQSIQLGVNDVVVAGGMESMSNAP 130

Query: 146 KYLAEARKGSRLGHDSLVDGMLKDGLWDVYNDVGMGSCAEICADNHSITREDQDNYAIQS 205
           KYL  AR GSRLGHD++VDGM+KDGLWDVYND GMG CAEICAD H+ITRE+QD+Y+IQS
Sbjct: 131 KYLVYARNGSRLGHDTIVDGMIKDGLWDVYNDFGMGICAEICADQHTITREEQDSYSIQS 190

Query: 206 FERGIAAQEGGAFAWEIVPVEVSGGRGKPSTIIDRDEGIGKFDPVKLRKLRPSFKQDGGT 265
           FERGI+AQ  GAFAWEI+PVEVSGGRGKPST++D+DEG+GKFD  KLRKLRPSFK DGG+
Sbjct: 191 FERGISAQNNGAFAWEIIPVEVSGGRGKPSTLVDKDEGLGKFDAAKLRKLRPSFK-DGGS 249

Query: 266 VTAGNASSISDGAAALVLVSGETALKLGLQVIAKITGYADAAQAPELFTTAPALAIPKAL 325
           VTAGNASSISDGAAALVLVSG+ A++L LQVIAKI GY DAAQAPELFTT PALAIPKA+
Sbjct: 250 VTAGNASSISDGAAALVLVSGKKAVELRLQVIAKIAGYGDAAQAPELFTTTPALAIPKAI 309

Query: 326 SSAGLDASQVDYYEINEAFAVVALSNQKLLGLNPEKVNVHGGAVSLGHPLGCSGARILVT 385
           S+AGL ASQ+DYYEINEAFAVVAL+NQKLLGL+PEKVNVHGGAVSLGHP+GCSGARILVT
Sbjct: 310 SNAGLKASQIDYYEINEAFAVVALANQKLLGLDPEKVNVHGGAVSLGHPIGCSGARILVT 369

Query: 386 LLGVLRQRXXXXXXXXXXXXXXXASALVLELL 417
           LLG+LRQ+               ASALVLEL+
Sbjct: 370 LLGILRQKNGKYGVGGICNGGGGASALVLELM 401


>GSVIVT01028557001 assembled CDS
          Length = 443

 Score =  197 bits (502), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 142/390 (36%), Positives = 208/390 (53%), Gaps = 46/390 (11%)

Query: 22  IFSVDVCIVGVARTPMGGFLGTLSSLPATKLGSIAIEAALKRAHVDPSLVQEVFFGNVLS 81
           I  V  C   + +   GGF  TL   P   L  + ++A +++ +VDPS V ++  G VL+
Sbjct: 53  IVVVAACRTAICKAKRGGFKDTL---PDDILAPV-LKALIEKTNVDPSEVGDIVVGTVLA 108

Query: 82  ANLGQA-PARQAALGAGISNSVVCTTVNKVCASGMKATMLAAQSIQLGINDVVVAGGMES 140
               +A   R AA  AG  ++V   TVN+ C+SG++A +    +I+ G+ D+ +  G+ES
Sbjct: 109 PGSQRAIECRMAAFYAGFPDTVPIRTVNRQCSSGLQAVVDVVAAIRAGLYDIGIGAGLES 168

Query: 141 MSN---------TPKY--LAEARKGSRLGHDSLVDGMLKDGLWDVYNDVGMGSCAEICAD 189
           M+           PK    A+AR           D +L            MG  +E  A 
Sbjct: 169 MTTDNIAGVTTVNPKVDIFAQAR-----------DCLLP-----------MGLTSENVAK 206

Query: 190 NHSITREDQDNYAIQSFERGIAAQEGGAFAWEIVPVEVS-----GGRGKPSTIIDRDEGI 244
            + +TR++QD  A++S  R  AA   G F  EI+PV         G  KP  II  D+GI
Sbjct: 207 RYGVTRQEQDQAAVESHRRAAAASAAGKFKEEIIPVSTKIVDPKTGEVKP-VIISVDDGI 265

Query: 245 GKFDPVK-LRKLRPSFKQDGGTVTAGNASSISDGAAALVLVSGETALKLGLQVIAKITGY 303
                +K L KL+P+F +DG T TAGNAS +SDGA   +L+    A+K GL ++     Y
Sbjct: 266 RPDTNMKSLAKLKPAFAKDGST-TAGNASQVSDGAGGALLMKRSLAMKRGLPILGLFRSY 324

Query: 304 ADAAQAPELFTTAPALAIPKALSSAGLDASQVDYYEINEAFAVVALSNQKLLGLNPEKVN 363
           A     P +    PA+AIP A  +AGL+ + +D +EINEAFA   +   K L L+P+KVN
Sbjct: 325 AAVGVEPGVMGVGPAVAIPIAAKNAGLEVADIDLFEINEAFASQYVYCCKKLDLDPKKVN 384

Query: 364 VHGGAVSLGHPLGCSGARILVTLLGVLRQR 393
           V+GGA++LGHPLG +GAR + TLL  +++R
Sbjct: 385 VNGGALALGHPLGATGARCVSTLLYEMKRR 414


>GSVIVT01029062001 assembled CDS
          Length = 461

 Score =  195 bits (495), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 134/383 (34%), Positives = 210/383 (54%), Gaps = 27/383 (7%)

Query: 22  IFSVDVCIVGVARTPM-----GGFLGTLSSLPATKLGSIAIEAALKRAHVDPSLVQEVFF 76
           +F  DV IV   RT +     GGF  T    P   L  + + A L++ +++P+ V ++  
Sbjct: 46  VFGDDVVIVAAYRTALCKSKRGGFKDTY---PDDLLAPV-LRALLEKTNLNPNEVGDIVV 101

Query: 77  GNVLSANLGQA-PARQAALGAGISNSVVCTTVNKVCASGMKATMLAAQSIQLGINDVVVA 135
           G VL+    +A   R AA  AG   +V   TVN+ C+SG++A    A +I+ G  D+ + 
Sbjct: 102 GTVLAPGSQRASECRMAAFYAGFPETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIG 161

Query: 136 GGMESMSNTPKYLAEARKGSRLGHDSLVDGMLKDGLWDVYNDVGMGSCAEICADNHSITR 195
            G+ESM+  P           +  +  ++  +K+ +      + MG  +E  A    +TR
Sbjct: 162 AGLESMTANP-----------MAWEGSINPKVKEFVQAQDCLLPMGITSENVAHRFGVTR 210

Query: 196 EDQDNYAIQSFERGIAAQEGGAFAWEIVPVE---VSGGRGKPSTI-IDRDEGIGKFDPVK 251
           ++QD  A++S +R  AA   G F  EI+PV    V    G    + I  D+GI     + 
Sbjct: 211 QEQDQAAVESHKRAAAATATGKFKDEIIPVSTKIVDPKTGDEKLVTISVDDGIRPNATMS 270

Query: 252 -LRKLRPSFKQDGGTVTAGNASSISDGAAALVLVSGETALKLGLQVIAKITGYADAAQAP 310
            L KL+P FK++G T TAGN+S +SDGA A++L+    A++ GL ++     +A     P
Sbjct: 271 DLAKLKPVFKKNG-TTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDP 329

Query: 311 ELFTTAPALAIPKALSSAGLDASQVDYYEINEAFAVVALSNQKLLGLNPEKVNVHGGAVS 370
            +    PA+AIP A+ SAGL+   +D +EINEAFA   +  +K L L+PEK+NV+GGA++
Sbjct: 330 AVMGIGPAVAIPAAVKSAGLELDDIDLFEINEAFASQFVYCRKKLDLDPEKINVNGGAMA 389

Query: 371 LGHPLGCSGARILVTLLGVLRQR 393
           +GHPLG +GAR + TLL  +++R
Sbjct: 390 IGHPLGATGARCVGTLLHEMKRR 412


>GSVIVT01037169001 assembled CDS
          Length = 102

 Score =  149 bits (376), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 78/101 (77%), Positives = 89/101 (88%), Gaps = 1/101 (0%)

Query: 251 KLRKLRPSFKQDGGTVTAGNASSISDGAAALVLVSGETALKLGLQVIAKITGYADAAQAP 310
           ++  L   FK DGG+VTAGNASSISDGAAALVLVSG+ A++L LQVIAKI GY DAAQAP
Sbjct: 3   QIHVLGSHFK-DGGSVTAGNASSISDGAAALVLVSGKKAVELRLQVIAKIAGYGDAAQAP 61

Query: 311 ELFTTAPALAIPKALSSAGLDASQVDYYEINEAFAVVALSN 351
           ELFTT PALAIPKA+S+AGL ASQ+DYYEIN+AFAVVAL+N
Sbjct: 62  ELFTTTPALAIPKAISNAGLKASQIDYYEINKAFAVVALAN 102


>GSVIVT01037164001 assembled CDS
          Length = 118

 Score =  147 bits (372), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 77/102 (75%), Positives = 89/102 (87%), Gaps = 1/102 (0%)

Query: 250 VKLRKLRPSFKQDGGTVTAGNASSISDGAAALVLVSGETALKLGLQVIAKITGYADAAQA 309
           V +R     FK DGG+VTAGNASSISDGAAALVLV+G+ A++L +QVIAKI GY DAAQA
Sbjct: 18  VLVRSSLTHFK-DGGSVTAGNASSISDGAAALVLVTGKKAVELRVQVIAKIAGYGDAAQA 76

Query: 310 PELFTTAPALAIPKALSSAGLDASQVDYYEINEAFAVVALSN 351
           PELFTT PALAIPKA+S+AGL ASQ+DYYEIN+AFAVVAL+N
Sbjct: 77  PELFTTTPALAIPKAISNAGLKASQIDYYEINKAFAVVALAN 118


>GSVIVT01037163001 assembled CDS
          Length = 208

 Score =  129 bits (323), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 57/75 (76%), Positives = 60/75 (80%)

Query: 130 NDVVVAGGMESMSNTPKYLAEARKGSRLGHDSLVDGMLKDGLWDVYNDVGMGSCAEICAD 189
           NDVVVAGGMESMSN PKYL +A  GSRLGHD+ VDGM KDGLWDVYND GM  CAEICAD
Sbjct: 133 NDVVVAGGMESMSNAPKYLVDATNGSRLGHDTTVDGMAKDGLWDVYNDFGMAICAEICAD 192

Query: 190 NHSITREDQDNYAIQ 204
            H ITRE Q  Y +Q
Sbjct: 193 QHKITREQQVTYCLQ 207


>GSVIVT01037168001 assembled CDS
          Length = 138

 Score =  127 bits (319), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 56/75 (74%), Positives = 60/75 (80%)

Query: 130 NDVVVAGGMESMSNTPKYLAEARKGSRLGHDSLVDGMLKDGLWDVYNDVGMGSCAEICAD 189
           NDVVVAGGME MSN PKYL +A  GSRLGHD++VDGM KDGLWDVYND GM  CAEICAD
Sbjct: 63  NDVVVAGGMERMSNAPKYLVDATNGSRLGHDTIVDGMAKDGLWDVYNDFGMAICAEICAD 122

Query: 190 NHSITREDQDNYAIQ 204
            H ITRE Q  Y +Q
Sbjct: 123 QHKITREQQVTYCLQ 137


>GSVIVT01037175001 assembled CDS
          Length = 86

 Score = 89.0 bits (219), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 42/52 (80%), Positives = 47/52 (90%)

Query: 314 TTAPALAIPKALSSAGLDASQVDYYEINEAFAVVALSNQKLLGLNPEKVNVH 365
           TT PALAIPKA+S+AGL ASQ+DYYEINEAFAVVAL+NQKLLGL+P  V VH
Sbjct: 14  TTTPALAIPKAISNAGLKASQIDYYEINEAFAVVALANQKLLGLDPVSVLVH 65