Jatropha Genome Database

JcCB0008321.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0008321.20 + phase: 0 /partial
         (152 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01033007001 assembled CDS                                        67   3e-12

>GSVIVT01033007001 assembled CDS
          Length = 287

 Score = 67.0 bits (162), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 60/147 (40%), Positives = 72/147 (48%), Gaps = 39/147 (26%)

Query: 10  EKPEARAWMAG--GDV--VTVEGDKAXXXXXXXXXXXXXXXXXRIGLTRNEVVAAVLGFG 65
           E+ EA A MAG  G++  VTV GDK                  R   TR+ V A+   FG
Sbjct: 3   EQNEAYALMAGVGGELSFVTVRGDKTHEGSD------------RSPPTRDLVAAS--SFG 48

Query: 66  VIRKKRMPRQRRPSSAINHLFSFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARVID 125
           V  +KRMPRQRR SSAIN L +F                                AR ID
Sbjct: 49  VQGRKRMPRQRR-SSAIN-LLTFAPSTSPHVPPPPP-------------------ARAID 87

Query: 126 QRRLSFLFQKELKNSDVSSLKRMILPK 152
           ++ L FLF+KELKNSDV SL+RM+LPK
Sbjct: 88  RKWLRFLFEKELKNSDVGSLRRMVLPK 114