Jatropha Genome Database

JcCB0008321.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0008321.10 + phase: 0 /pseudo/partial
         (160 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01027519001 assembled CDS                                       115   8e-27

>GSVIVT01027519001 assembled CDS
          Length = 522

 Score =  115 bits (288), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 62/113 (54%), Positives = 79/113 (69%), Gaps = 13/113 (11%)

Query: 6   SVVNEITQNLAEEGSGKFMINLVDCGILF-------------TANNDNLKRIIISKDRIR 52
           SVV E+ Q LAEEG  K MINL+DCGIL              TA+N+NL+R +I++  +R
Sbjct: 268 SVVPEVRQTLAEEGIIKVMINLLDCGILLGSKEYAAECLQNLTASNENLRRSVITEGGVR 327

Query: 53  NPLAYLDGPLPQESVVRTLKNLVILVSAEIMASLGFLSSLIHVIEPGSLGAQK 105
           + LAYLDGPLPQES V  L+NLV  VS E++ SLGFL  L+HV++ GSLGAQ+
Sbjct: 328 SLLAYLDGPLPQESAVGALRNLVGSVSMEVLVSLGFLPRLVHVLKSGSLGAQQ 380