Jatropha Genome Database

JcCB0008031.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0008031.30 - phase: 0 
         (313 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01035559001 assembled CDS                                       329   9e-91
GSVIVT01006716001 assembled CDS                                       283   9e-77
GSVIVT01030578001 assembled CDS                                       272   1e-73
GSVIVT01030607001 assembled CDS                                       223   1e-58
GSVIVT01022480001 assembled CDS                                       204   4e-53
GSVIVT01018937001 assembled CDS                                       174   5e-44
GSVIVT01023788001 assembled CDS                                       108   4e-24
GSVIVT01026367001 assembled CDS                                        86   3e-17

>GSVIVT01035559001 assembled CDS
          Length = 239

 Score =  329 bits (844), Expect = 9e-91,   Method: Compositional matrix adjust.
 Identities = 169/230 (73%), Positives = 184/230 (80%), Gaps = 29/230 (12%)

Query: 1   MNDLMTKSFISYVDLKKEAMKDLEAGPDPDVEMANASNTMDQNLGLFLEEAEIVKKEMGS 60
           MNDLMTKSFISYVDLKKEAMKDLEAGP+ D++M+     MD+NLGLFLEEAE VK+EMG 
Sbjct: 1   MNDLMTKSFISYVDLKKEAMKDLEAGPEYDLQMSGTQ--MDRNLGLFLEEAEKVKQEMGL 58

Query: 61  IREILDSLQQSNEESKSLHKSEAVKSLRNIINADIVTVLKKARAIRAQLEEMDRANEANR 120
           IREIL  L ++NEESK                           AI++QLEEMDRAN AN 
Sbjct: 59  IREILGRLHEANEESK---------------------------AIKSQLEEMDRANAANM 91

Query: 121 RLSAFKEGTPIYRTRIAVTNGLRKKLKELMMDFQGLRQKMMAEYKETVGRRYFTVTGEYP 180
           RLS +KEGTP+YRTR AVTNGLRKKLKELMMDFQGLRQ+MM EYKETVGRRYFTVTGEYP
Sbjct: 92  RLSGYKEGTPVYRTRAAVTNGLRKKLKELMMDFQGLRQRMMTEYKETVGRRYFTVTGEYP 151

Query: 181 DEEVIEKIISDDNGGEEFLKRAIQEHGKGKVLETVVEIQDRHDAAKEIEK 230
           DEEVIEKIIS+  GGEEFL RAIQEHG+GKVLETVVEIQDRHDAAKEIEK
Sbjct: 152 DEEVIEKIISNGEGGEEFLGRAIQEHGRGKVLETVVEIQDRHDAAKEIEK 201


>GSVIVT01006716001 assembled CDS
          Length = 310

 Score =  283 bits (723), Expect = 9e-77,   Method: Compositional matrix adjust.
 Identities = 140/288 (48%), Positives = 204/288 (70%), Gaps = 14/288 (4%)

Query: 1   MNDLMTKSFISYVDLKKEA-MKDLEAGPDPDVEMANASNTMDQNLGLFLEEAEIVKKEMG 59
           MNDL + SF  Y DLK++  M D+E+G +              NL  F E+ E VK++MG
Sbjct: 1   MNDLFSSSFKKYTDLKQQTYMDDMESGKEA------------VNLDKFFEDVENVKQDMG 48

Query: 60  SIREILDSLQQSNEESKSLHKSEAVKSLRNIINADIVTVLKKARAIRAQLEEMDRANEAN 119
            + ++   LQ +NEESK++H ++ +K LR  +++D+  VLK+ + I+ +LE ++R+N A+
Sbjct: 49  GVEKLYKQLQDANEESKTVHNAKTMKDLRARMDSDVTQVLKRVKMIKGKLEGLERSNAAS 108

Query: 120 RRLSAFKEGTPIYRTRIAVTNGLRKKLKELMMDFQGLRQKMMAEYKETVGRRYFTVTGEY 179
           R +     G+   RTR +V +GL KKLK++M DFQGLR KM  EYKETV RRY+T+TG+ 
Sbjct: 109 RNVPGCGPGSSADRTRSSVVSGLGKKLKDMMDDFQGLRAKMSTEYKETVERRYYTITGQK 168

Query: 180 PDEEVIEKIISDDNGGEEFLKRAIQEHGKGKVLETVVEIQDRHDAAKEIEKSLLELHQVF 239
            DE+ IE +IS     E FL++AIQE G+G++++T+ EIQ+RHDA KEIEK+L+ELHQVF
Sbjct: 169 ADEDTIENLISSGE-SESFLQKAIQEQGRGQIMDTISEIQERHDAVKEIEKNLIELHQVF 227

Query: 240 LDMAVMVEAQGEQLDDIEHHVLNASHYVKDGAKELKTAKDYQRSSRKW 287
           LDMA +VEAQG+QL+DIE HV +AS +V+ G ++L+ A++YQ+ SRKW
Sbjct: 228 LDMAALVEAQGQQLNDIESHVAHASSFVRRGTEQLQVAREYQKGSRKW 275


>GSVIVT01030578001 assembled CDS
          Length = 305

 Score =  272 bits (696), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 140/287 (48%), Positives = 196/287 (68%), Gaps = 10/287 (3%)

Query: 1   MNDLMTKSFISYVDLKKEAMKDLEAGPDPDVEMANASNTMDQNLGLFLEEAEIVKKEMGS 60
           MNDL + SF  + DLK ++  D+EAG D   E  N        L  F EE E VK +M +
Sbjct: 1   MNDLFSSSFKRFTDLKPQSF-DVEAGGDAGRESVN--------LEKFFEEVENVKDDMRA 51

Query: 61  IREILDSLQQSNEESKSLHKSEAVKSLRNIINADIVTVLKKARAIRAQLEEMDRANEANR 120
           +      LQ  NEESK++H ++ +K LR  ++ D+V VLK+ + I+ +LE ++R+N ANR
Sbjct: 52  VENFYKKLQDLNEESKTVHNAKTMKDLRARMDTDVVQVLKRVKIIKGKLEALERSNAANR 111

Query: 121 RLSAFKEGTPIYRTRIAVTNGLRKKLKELMMDFQGLRQKMMAEYKETVGRRYFTVTGEYP 180
                  G+   RTR +V  GL KKLK++M DFQ LR +M AEYK+T+ RRYFT+TGE  
Sbjct: 112 NHPGCGPGSSADRTRTSVVGGLGKKLKDMMDDFQNLRVRMNAEYKDTIERRYFTITGEKA 171

Query: 181 DEEVIEKIISDDNGGEEFLKRAIQEHGKGKVLETVVEIQDRHDAAKEIEKSLLELHQVFL 240
           DEE IE +IS     E FL++AIQ+ G+G++++T+ E+Q+RH A KEIEK+L+ELHQVFL
Sbjct: 172 DEETIENLISSGE-SETFLQKAIQDQGRGQIMDTISELQERHGAVKEIEKNLIELHQVFL 230

Query: 241 DMAVMVEAQGEQLDDIEHHVLNASHYVKDGAKELKTAKDYQRSSRKW 287
           DMA +VEAQG+ L+DIE HV +AS +V+ G  +L+ A++YQ+SSRKW
Sbjct: 231 DMAALVEAQGQHLNDIESHVAHASSFVRKGTDQLQIARNYQKSSRKW 277


>GSVIVT01030607001 assembled CDS
          Length = 400

 Score =  223 bits (567), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 131/288 (45%), Positives = 191/288 (66%), Gaps = 11/288 (3%)

Query: 1   MNDLMTKSFISYVDLKKEAMKDLEAGPDPDVEMANASNTMDQNLGL--FLEEAEIVKKEM 58
           MNDL+T SF+   D K +  K+       D+EM       + +LGL  F ++ + V+K++
Sbjct: 97  MNDLLTDSFVG--DAKVQPPKE------RDIEMGTRVLRTNSDLGLEAFNKQIQEVEKQV 148

Query: 59  GSIREILDSLQQSNEESKSLHKSEAVKSLRNIINADIVTVLKKARAIRAQLEEMDRANEA 118
             +  +L  L+ +NEESKS+ K+ A+K ++  +  D+  V K A+ ++A+LE ++R N A
Sbjct: 149 DKLTFLLKKLKDANEESKSVTKASAMKEIKKRLEKDVDEVGKIAQNVKAKLEAINRDNLA 208

Query: 119 NRRLSAFKEGTPIYRTRIAVTNGLRKKLKELMMDFQGLRQKMMAEYKETVGRRYFTVTGE 178
           NR+    ++GT + R+R  +TN L KK K+LM+DFQ LRQKM  EY+E V RR  TVTG 
Sbjct: 209 NRKKPGCEKGTGVDRSRKNMTNALTKKFKDLMIDFQALRQKMQDEYREVVERRVMTVTGT 268

Query: 179 YPDEEVIEKIISDDNGGEEFLKRAIQEHGKGKVLETVVEIQDRHDAAKEIEKSLLELHQV 238
            PDEE I+ +I   N  E+  ++AIQE G+G+VL T+ EIQ+RHD  KEIEK LL+LHQ+
Sbjct: 269 RPDEETIDNLIETGN-SEQIFQKAIQEMGRGQVLATLEEIQERHDTVKEIEKKLLDLHQI 327

Query: 239 FLDMAVMVEAQGEQLDDIEHHVLNASHYVKDGAKELKTAKDYQRSSRK 286
           +LDMAV+VEAQG+ L++IE+ V NA  +V+ G   L+TAK  Q+ SRK
Sbjct: 328 YLDMAVLVEAQGDLLNNIENQVTNAVDHVQWGTDALRTAKSLQKKSRK 375


>GSVIVT01022480001 assembled CDS
          Length = 307

 Score =  204 bits (519), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 118/289 (40%), Positives = 188/289 (65%), Gaps = 12/289 (4%)

Query: 1   MNDLMTKSFISYVDLKKEAMKDLEAGPDPDVEMANASNTMDQNLGL--FLEEAEIVKKEM 58
           MNDL+++SF          +   +A  + D+E+   +      LGL  F ++ + ++K+ 
Sbjct: 1   MNDLLSESF---------EIPRGQASREGDIELGERALQNSGELGLENFFKKVQEIEKQN 51

Query: 59  GSIREILDSLQQSNEESKSLHKSEAVKSLRNIINADIVTVLKKARAIRAQLEEMDRANEA 118
             +   L  LQ ++EESK++ K+ A+K+++  +  D+  V K AR+I+A++EE+D+ N A
Sbjct: 52  DKLNVQLKKLQDAHEESKAVTKAAAMKAIKKRMEKDVDEVGKIARSIKAKVEELDKENLA 111

Query: 119 NRRLSAFKEGTPIYRTRIAVTNGLRKKLKELMMDFQGLRQKMMAEYKETVGRRYFTVTGE 178
           NR+     +GT + R+R A T  L+KK K+ M +FQ LR+ +  EY+E V RR FTVTG 
Sbjct: 112 NRQKPGCGKGTGVDRSRTATTVALKKKFKDKMAEFQVLRESIHQEYREVVERRVFTVTGT 171

Query: 179 YPDEEVIEKIISDDNGGEEFLKRAIQEHGKGKVLETVVEIQDRHDAAKEIEKSLLELHQV 238
             DEE I+++I   +  E+  ++AIQE G+G++++T+ EIQ+RHDA +E+E+ LL+L Q+
Sbjct: 172 RADEETIDRLIETGD-SEQIFQKAIQEQGRGQIMDTLAEIQERHDAVREVERKLLDLQQI 230

Query: 239 FLDMAVMVEAQGEQLDDIEHHVLNASHYVKDGAKELKTAKDYQRSSRKW 287
           FLDMAV+V+AQG+ LD+IE  V +A  +V+ G   L+ AK  QRSSRKW
Sbjct: 231 FLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQRAKKLQRSSRKW 279


>GSVIVT01018937001 assembled CDS
          Length = 259

 Score =  174 bits (441), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 104/287 (36%), Positives = 161/287 (56%), Gaps = 50/287 (17%)

Query: 1   MNDLMTKSFISYVDLKKEAMKDLEAGPDPDVEMANASNTMDQNLGLFLEEAEIVKKEMGS 60
           MNDLMTKSF+SYV+LKK+A  DLEA  + D+E+       ++NL  F EE   +K  M  
Sbjct: 1   MNDLMTKSFLSYVELKKQAEMDLEAEAEADIEIGKLKPKDEENLSQFFEEVAAIKTVMEE 60

Query: 61  IREILDSLQQSNEESKSLHKSEAVKSLRNIINADIVTVLKKARAIRAQLEEMDRANEANR 120
           I  ++  L   NEE+KS H +E +                                    
Sbjct: 61  ITNLVLDLHNLNEETKSTHSAEVL------------------------------------ 84

Query: 121 RLSAFKEGTPIYRTRIAVTNGLRKKLKELMMDFQGLRQKMMAEYKETVGRRYFTVTGEYP 180
               ++EG+P+ RTR++VTNGLR KL+++M DF  LR++++ +++ET+ RRY+  TG   
Sbjct: 85  ---PYREGSPVDRTRMSVTNGLRSKLRDMMNDFHSLRERILWDHRETLKRRYYNATGSEA 141

Query: 181 DEEVIEKIISDDNGGEEFLKRAIQEHGKGKVLETVVEIQDRHDAAKEIEKSLLELHQVFL 240
            EEV+EK+++     E F         +GK    +V  ++R++A +EI++SL +L QV L
Sbjct: 142 SEEVVEKMMTGSVQIEAF---------EGKTGGDLVN-RERNEALREIQRSLDKLRQVLL 191

Query: 241 DMAVMVEAQGEQLDDIEHHVLNASHYVKDGAKELKTAKDYQRSSRKW 287
           DMAV+V +QGE++DDIE +V  A +++  G   L  AK  ++  +KW
Sbjct: 192 DMAVLVGSQGEKMDDIEENVAIAGNFISGGTNSLVYAKQMKK-GKKW 237


>GSVIVT01023788001 assembled CDS
          Length = 164

 Score =  108 bits (269), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 62/120 (51%), Positives = 87/120 (72%), Gaps = 2/120 (1%)

Query: 1   MNDLMTKSFISYVDLKKEAMKDLEAGPDPDVEMANASNTMDQNLGLFLEEAEIVKKEMGS 60
           MNDLMTKSF+SYV+LKK+AMKDLE+  +PD+EM     T +QNL  F EE   +K +M  
Sbjct: 1   MNDLMTKSFLSYVELKKQAMKDLES--EPDIEMGKLDPTDEQNLTNFFEEVGAIKTDMEE 58

Query: 61  IREILDSLQQSNEESKSLHKSEAVKSLRNIINADIVTVLKKARAIRAQLEEMDRANEANR 120
           I  +L  LQ  NEESKS H ++ ++ LR+ IN+D+VT+L+KA+ I+A+L  +D++N  NR
Sbjct: 59  IVNLLLDLQDLNEESKSTHSAKVLRGLRDRINSDMVTILRKAKNIKARLGSLDQSNIDNR 118


>GSVIVT01026367001 assembled CDS
          Length = 179

 Score = 85.5 bits (210), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 35/75 (46%), Positives = 58/75 (77%)

Query: 124 AFKEGTPIYRTRIAVTNGLRKKLKELMMDFQGLRQKMMAEYKETVGRRYFTVTGEYPDEE 183
           A++EG+P+ RTRI+VTNGLR KL+++M DF  LR++++ +++ET+ RRY+  TG    EE
Sbjct: 50  AYREGSPVDRTRISVTNGLRSKLRDMMNDFNSLRERILWDHRETLKRRYYNATGSEASEE 109

Query: 184 VIEKIISDDNGGEEF 198
           V+EK+++  + GE+ 
Sbjct: 110 VVEKMMTGSSQGEKM 124



 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 24/44 (54%), Positives = 32/44 (72%)

Query: 1  MNDLMTKSFISYVDLKKEAMKDLEAGPDPDVEMANASNTMDQNL 44
          MNDLMTKSF+SYV+LKK+A  DLEA  + D+E+       ++NL
Sbjct: 1  MNDLMTKSFLSYVELKKQAEMDLEAEAEADIEIGKLKPKDEENL 44