Jatropha Genome Database

JcCB0008031.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0008031.20 + phase: 0 
         (481 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01026405001 assembled CDS                                       667   0.0  

>GSVIVT01026405001 assembled CDS
          Length = 437

 Score =  667 bits (1720), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 319/432 (73%), Positives = 362/432 (83%), Gaps = 3/432 (0%)

Query: 50  KSRRHVQLIRSYRNYCGLVLRCSHQFSGWTNKFPSFSSTAASINKAKEVLNFLMLSVSNN 109
           +S RH +L+RSYRN   +  +  +  S  T+K      +   I + +EV  F + +V N 
Sbjct: 9   RSSRHSKLLRSYRNCIQVESKYPNFLSHRTHKISPMCGSNNIIPEVEEVFEFPVATVLNL 68

Query: 110 LKEKGQLQFLKVAGILACALLVIPSADAVDALKTCACLLKECRLELXXXXXXXXXXXXXX 169
           LK+  QL F+KV G+LAC +L+IPSA+AVDALKTC CLLKECRLEL              
Sbjct: 69  LKKWSQLHFMKVVGVLACTMLLIPSANAVDALKTCTCLLKECRLELAKCIANPSCAANVA 128

Query: 170 XLQTCNNRPDETECQIKCGDLFENNVVDEFNECAVSRKKCVPKKSDVGEFPVPDPAVLVK 229
            LQTCNNRPDETECQIKCGDLFENNVVDEFNECAVSRKKCVP+KSD+GEFPVPDPAVLVK
Sbjct: 129 CLQTCNNRPDETECQIKCGDLFENNVVDEFNECAVSRKKCVPRKSDIGEFPVPDPAVLVK 188

Query: 230 SFNIADFSGKWFITSGLNPTFDTFDCQLHDFHRESNRLVGNLSWRIRTPDGGFFTRSTVQ 289
           +FNIADFSGKWFITSGLNPTFDTFDCQLH+FH ESN+LVGNLSWRIRTPDGGFFTRST+Q
Sbjct: 189 NFNIADFSGKWFITSGLNPTFDTFDCQLHEFHTESNKLVGNLSWRIRTPDGGFFTRSTMQ 248

Query: 290 KFVQDPLQPGILYNHDNEYLHYQDDWYILSSKLENSENDYIFVYYRGRNDAWDGYGGAVV 349
           +FVQDP QPGILYNHDNEYLHYQDDWY+LSSK+EN  +DY+FVYY+GRNDAWDGYGGAVV
Sbjct: 249 RFVQDPNQPGILYNHDNEYLHYQDDWYVLSSKIENKPDDYVFVYYQGRNDAWDGYGGAVV 308

Query: 350 YTRSAVLPESIIPELETAAKKVGRDFNKFIITDNTCGPEPPLAERIEKTVEEGEKTIIRE 409
           YTRSA LPESI+PELE AAK VGRDFNKFI TDNTCGPEPPL ER+EKTVEEGEKTIIRE
Sbjct: 309 YTRSATLPESIVPELEKAAKSVGRDFNKFIRTDNTCGPEPPLVERLEKTVEEGEKTIIRE 368

Query: 410 VEEIEGNVEKVGKTEMALFQRLAEGFKELQQDEEFFVRELSKEEMDILNDLKMEAGEVEK 469
           VEEIEG   ++GKTE   F+ L EGFKEL++DEE+F++ELSKEEMD+L++LKMEA EVEK
Sbjct: 369 VEEIEG---ELGKTEKTFFETLMEGFKELRKDEEYFLKELSKEEMDLLSELKMEASEVEK 425

Query: 470 LFGEALPLRKLR 481
           LFG ALPLRKLR
Sbjct: 426 LFGRALPLRKLR 437