Jatropha Genome Database
- JcCB0007881.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0007881.10 + phase: 2 /TE
(218 letters)
Database: grape_pep_20100319
26,346 sequences; 9,959,944 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
GSVIVT01000641001 assembled CDS 116 9e-27
GSVIVT01012382001 assembled CDS 107 3e-24
GSVIVT01028343001 assembled CDS 102 2e-22
GSVIVT01015960001 assembled CDS 77 8e-15
GSVIVT01009548001 assembled CDS 66 1e-11
GSVIVT01013655001 assembled CDS 49 2e-06
GSVIVT01026124001 assembled CDS 48 4e-06
GSVIVT01013341001 assembled CDS 47 6e-06
>GSVIVT01000641001 assembled CDS
Length = 947
Score = 116 bits (290), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 62/137 (45%), Positives = 90/137 (65%), Gaps = 1/137 (0%)
Query: 81 DRIDRKSTSGTCQFLGSALVSXFSKKQISVALSTTEAKYVTAGSCVAQVLWIKQXLADYG 140
D+ +R+STSG LG+ VS SKKQ V LSTTEA++V A C Q +W+++ L +
Sbjct: 311 DQDNRRSTSGYVFMLGTGAVSWSSKKQPIVTLSTTEAEFVAATVCACQAIWLRKILEELH 370
Query: 141 LK-LETVPIKCENISTINLSENPVQHSRTKHIELRHHFIRDHVQKGYIIIEFIPTEKQLA 199
LK + I C+N STI LS+NPV H R+KHI+++++F+RD G I + + +E Q+A
Sbjct: 371 LKQVGATTIFCDNSSTIKLSKNPVLHGRSKHIDVKYYFLRDLSNDGVIDLVYCRSENQVA 430
Query: 200 DIFTKPLNESQFCSIRR 216
DIFTKPL + F +R+
Sbjct: 431 DIFTKPLKLAVFLELRK 447
>GSVIVT01012382001 assembled CDS
Length = 952
Score = 107 bits (268), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 59/131 (45%), Positives = 81/131 (61%), Gaps = 3/131 (2%)
Query: 83 IDRKSTSGTCQFLGSALVSXFSKKQISVALSTTEAKYVTAGSCVAQVLWIKQXLADYGLK 142
IDR+ST+G C F+G LVS SKKQ VA S+ EA+Y + +++W+K L D G
Sbjct: 807 IDRRSTTGYCMFVGGNLVSWKSKKQPVVARSSAEAEYRAMAAASCEMVWLKNLLTDLGFS 866
Query: 143 LETVPIK--CENISTINLSENPVQHSRTKHIELRHHFIRDHVQKGYIIIEFIPTEKQLAD 200
T P+K C+N + ++++ NPV H RTKHIE+ HFIR VQ I +I + QLAD
Sbjct: 867 -PTSPMKLFCDNQAAMHIAANPVFHERTKHIEVDCHFIRQQVQSKVIQTHYIRSSDQLAD 925
Query: 201 IFTKPLNESQF 211
FTK L+ + F
Sbjct: 926 AFTKVLSSTVF 936
>GSVIVT01028343001 assembled CDS
Length = 2295
Score = 102 bits (253), Expect = 2e-22, Method: Composition-based stats.
Identities = 52/124 (41%), Positives = 77/124 (62%), Gaps = 1/124 (0%)
Query: 84 DRKSTSGTCQFLGSALVSXFSKKQISVALSTTEAKYVTAGSCVAQVLWIKQXLADYGL-K 142
DR+STSG C F+G L+S SKKQ VA S+ EA+Y +++W++ L + K
Sbjct: 1466 DRRSTSGYCVFIGGNLISWKSKKQDVVARSSAEAEYRAMALATCELIWLRHLLQELRFGK 1525
Query: 143 LETVPIKCENISTINLSENPVQHSRTKHIELRHHFIRDHVQKGYIIIEFIPTEKQLADIF 202
E + + C+N + ++++ NPV H RTKHIE+ HFIR+ + G + F+ + QLADIF
Sbjct: 1526 DEQMKLICDNQAALHIASNPVFHERTKHIEVDCHFIREKIASGCVATSFVNSNDQLADIF 1585
Query: 203 TKPL 206
TK L
Sbjct: 1586 TKSL 1589
>GSVIVT01015960001 assembled CDS
Length = 1205
Score = 76.6 bits (187), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 59/84 (70%), Gaps = 3/84 (3%)
Query: 130 LWIKQXLADYGLKLETVPIK--CENISTINLSENPVQHSRTKHIELRHHFIRDHVQKGYI 187
+WI++ L + + + P+K C+N + I+++ NPV H RTKH+E+ HFI++ + G +
Sbjct: 1 MWIRRLLEELKMT-GSSPMKLYCDNKAVISVAYNPVLHDRTKHVEVDKHFIKEKIDNGLV 59
Query: 188 IIEFIPTEKQLADIFTKPLNESQF 211
+ +IPTE+Q+AD+FTK L++ QF
Sbjct: 60 CMTYIPTEEQVADVFTKGLHKRQF 83
>GSVIVT01009548001 assembled CDS
Length = 849
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 72/131 (54%), Gaps = 3/131 (2%)
Query: 84 DRKSTSGTCQFLGSALVSXFSKKQISVALSTTEAKYVTAGSCVAQVLWIKQXLADYGLK- 142
D KSTSG L +S S KQ +A ST AK+V +QV+W+++ +++ +
Sbjct: 675 DCKSTSGYIFMLTGGAISWKSVKQSLIAFSTMYAKFVACYGASSQVVWLRKLISELQVVD 734
Query: 143 --LETVPIKCENISTINLSENPVQHSRTKHIELRHHFIRDHVQKGYIIIEFIPTEKQLAD 200
+ I C+N +T+ S+N + +KH+E+++ ++D V+K I+I+ I TE LAD
Sbjct: 735 SIFRPIVIYCDNNATVFYSKNNKISTSSKHMEIKYLIVKDLVKKEDIVIKHIRTESMLAD 794
Query: 201 IFTKPLNESQF 211
TK L F
Sbjct: 795 PLTKGLKPIMF 805
>GSVIVT01013655001 assembled CDS
Length = 4396
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 81 DRIDRKSTSGTCQFLGSALVSXFSKKQISVALSTTEAKYVTAGSCVAQVLWIKQXLADYG 140
++ D STS +LG +S SKKQ +VA S+TEA+Y + S A++ WI L + G
Sbjct: 4309 NKDDFTSTSAYIIYLGHNPISWSSKKQRTVARSSTEAEYRSVASTAAEIRWICSLLTELG 4368
Query: 141 LKLETVP-IKCENISTINL 158
+ L P I C+N+ +L
Sbjct: 4369 VTLPQQPVIYCDNVGATHL 4387
>GSVIVT01026124001 assembled CDS
Length = 1018
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 45/76 (59%)
Query: 129 VLWIKQXLADYGLKLETVPIKCENISTINLSENPVQHSRTKHIELRHHFIRDHVQKGYII 188
++W+ L + K E + ++ S I L++N V HS++KHI+ ++HFIR ++ +I
Sbjct: 1 MIWLHGLLDELAKKQEMRILHSDSHSAIFLAKNSVFHSKSKHIQTKYHFIRYLIEDKLVI 60
Query: 189 IEFIPTEKQLADIFTK 204
+E I K AD+ TK
Sbjct: 61 LEKIYGSKNPADMLTK 76
>GSVIVT01013341001 assembled CDS
Length = 503
Score = 47.4 bits (111), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 45/77 (58%), Gaps = 2/77 (2%)
Query: 84 DRKSTSGTCQFLGSALVSXFSKKQISVALSTTEAKYVTAGSCVAQVLWIKQXLADYGLKL 143
DR+STSG C F+ L++ SKKQ VA S+ E K+ + + +VLWIK+ L + LK+
Sbjct: 51 DRRSTSGYCTFVFGNLITWRSKKQNVVARSSAEVKFRSIAHGICEVLWIKRVLEE--LKI 108
Query: 144 ETVPIKCENISTINLSE 160
P+ + S + L E
Sbjct: 109 TIHPLAMISNSLLPLLE 125