Jatropha Genome Database

JcCB0007551.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0007551.20 + phase: 0 /partial
         (542 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01036290001 assembled CDS                                       896   0.0  
GSVIVT01004941001 assembled CDS                                       182   2e-46
GSVIVT01032996001 assembled CDS                                       179   3e-45

>GSVIVT01036290001 assembled CDS
          Length = 871

 Score =  896 bits (2316), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 450/532 (84%), Positives = 495/532 (93%), Gaps = 2/532 (0%)

Query: 13  FVSQWGRRESTCVH-VSSPVKAVLLDESKEKVCIPRGDAWSVHKFGGTCVGTSERIKNVA 71
           +V QWGRR+S+ +  +S+ V  V LD+S EKV +P+GD WSVHKFGGTCVGTSERIKNVA
Sbjct: 3   YVCQWGRRKSSNMQLISASVMDVSLDKSMEKVQLPKGDNWSVHKFGGTCVGTSERIKNVA 62

Query: 72  EIIVNDGSEGKLVVVSAMSKVTDMMYDLIYKAQSRDDSYIAAVDAVFEKHRLTAMDLLDG 131
           EIIV D SE KLVVVSAMSKVTDMMYDLIYKAQSRDDSYI+AVDAV EKHRLTA+DLLDG
Sbjct: 63  EIIVKDDSERKLVVVSAMSKVTDMMYDLIYKAQSRDDSYISAVDAVLEKHRLTALDLLDG 122

Query: 132 EDLASFLSRLHHDVNNLKAMLRAIYIAGHATESFSDFVVGHGELWSAQILSYAVRKSGID 191
           +DLASFLSRLHHD+N +K MLRAIYIAGHA+E FSD +VGHGELWSAQ+LS  VRK GID
Sbjct: 123 DDLASFLSRLHHDINEIKEMLRAIYIAGHASELFSDIIVGHGELWSAQMLSSVVRKKGID 182

Query: 192 CRWMDTREVLIVNPTSSNQVDPDFVESEKRLEEWYSQNPCKTIVATGFIASTPQNIPTTL 251
           C+WMDTR+VLIVNPTS+NQVDPDFVESE RLE+W+ QNP KTIVATGFIASTPQNIPTTL
Sbjct: 183 CKWMDTRDVLIVNPTSANQVDPDFVESEMRLEKWFFQNPSKTIVATGFIASTPQNIPTTL 242

Query: 252 KRDGSDFSAAIMGALLRAQQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGA 311
           KRDGSDFSAAIMGAL RA+QVTIWTDVDGVYSADPRKV+EAVIL  LSYQEAWEMSYFGA
Sbjct: 243 KRDGSDFSAAIMGALFRARQVTIWTDVDGVYSADPRKVAEAVILNQLSYQEAWEMSYFGA 302

Query: 312 NVLHPRTIIPVMRYDIPIMIRNIFNLSSPGTMICQPSMNENEDGQKLDS-VKGFATIDNV 370
           NVLHPRTIIPVM+Y IPI+IRNIFNLS+PGTMIC+PS++ENE  Q+L+S VKGFATIDNV
Sbjct: 303 NVLHPRTIIPVMQYGIPIVIRNIFNLSAPGTMICRPSVDENEGNQRLESPVKGFATIDNV 362

Query: 371 ALVNVEGTGMAGIPGTASAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAETLQ 430
           AL+NVEGTGMAG+PGTASAIF AVKDVGANVIMISQASSEHSVCFAVPEKEV+AVAE LQ
Sbjct: 363 ALINVEGTGMAGVPGTASAIFSAVKDVGANVIMISQASSEHSVCFAVPEKEVEAVAEALQ 422

Query: 431 SRFREALDVGRLSQVAIIPNCSILAAVGQKMASTPGVSATLFNALAKANINVRAIAQGCS 490
           SRFR+ALD GRLSQVA++PNCSILA VGQ+MASTPGVSA+LF+ALAKANIN+RAIAQGCS
Sbjct: 423 SRFRQALDAGRLSQVAVVPNCSILATVGQRMASTPGVSASLFSALAKANINIRAIAQGCS 482

Query: 491 EYNITVVVKREDCIRALKAVHSRFFLSKTTIAMGIIGPGLIGATLLEQLRDQ 542
           EYNITVVVKREDCIRALKAVHSRF+LS+TTIAMGIIGPGLIG TLL+QLRDQ
Sbjct: 483 EYNITVVVKREDCIRALKAVHSRFYLSRTTIAMGIIGPGLIGGTLLDQLRDQ 534


>GSVIVT01004941001 assembled CDS
          Length = 482

 Score =  182 bits (463), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 137/472 (29%), Positives = 242/472 (51%), Gaps = 31/472 (6%)

Query: 55  KFGGTCVGTSERIKNVAEIIVNDGSEGKLVVVSAMSKVTDMMYDLIYKAQS---RDDSYI 111
           KFGG+ + ++ER++ VA++++    E  ++V+SAM K T+ +     KA S    + S I
Sbjct: 2   KFGGSSLASAERMREVADLVLQFRDERPVIVLSAMGKTTNNLLLAGEKAVSCGVSNASEI 61

Query: 112 AAVDAVFEKHRLTAMDL-LDGEDLASFLSRLHHDVNNLKAMLRAIYIAGHATESFSDFVV 170
             +  V E H  T  +L LD   ++  L  L         +L+ I +    T   +D++V
Sbjct: 62  DELSLVKELHLRTVQELGLDSSVISGHLEELEQ-------LLKGIAMMKELTFRTTDYLV 114

Query: 171 GHGELWSAQILSYAVRKSGIDCRWMDTREVLIVNPTSSNQVDPDFVESE-----KRLEEW 225
             GE  S +I +  + K G   R  D  ++  +  T+ +  + D +E+      KRL   
Sbjct: 115 SFGECMSTRIFAAYLNKIGAKARQYDAFDIGFI--TTDDFTNADILEATYPAVAKRLYND 172

Query: 226 YSQNPCKTIVATGFIAST-PQNIPTTLKRDGSDFSAAIMGALLRAQQVTIWTDVDGVYSA 284
           +  +P   IV TGF+         TTL R GSD +A  +G  L  Q++ +W DVDGV + 
Sbjct: 173 WINDPAIPIV-TGFLGKGWKSGAVTTLGRGGSDLTATAIGRALGLQEIQVWKDVDGVLTC 231

Query: 285 DPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIMIRNIFNLSSPGTMI 344
           DP     A+ +  L++ EA E++YFGA VLHP+ + P    DIP+ ++N +N  +PGT+I
Sbjct: 232 DPSIYPRALPVPYLTFDEAAELAYFGAQVLHPQAMRPARESDIPVRVKNSYNPEAPGTLI 291

Query: 345 CQPSMNENEDGQKLDSVKGFATIDNVALVNVEGTGMAGIPGTASAIFGAVKDVGANVIMI 404
                N+  D  K   +       NV ++++  T M G  G  + +F   +D+G +V ++
Sbjct: 292 -----NKTRDMSK-AVLTSIVLKRNVTMLDIVSTRMLGQFGFLAKVFSIFEDLGISVDVV 345

Query: 405 SQASSEHSVCFAVPEKEVKAVAETLQSRFREAL-DVGRLSQVAIIPNCSILAAVGQKMAS 463
             A+SE S+   +   ++ +  E +Q      + ++ +++ V ++ + SI++ +G    S
Sbjct: 346 --ATSEVSISLTLDPSKLWS-RELIQQELDHVVEELEKIAVVNLLQHRSIISLIGNIQRS 402

Query: 464 TPGVSATLFNALAKANINVRAIAQGCSEYNITVVVKREDCIRALKAVHSRFF 515
           +  +    FN L    +NV+ I+QG S+ NI+++V   +  + +KA+H  FF
Sbjct: 403 SL-ILEKAFNVLRTIGVNVQMISQGASKVNISLIVNDSEAEQCVKALHHAFF 453


>GSVIVT01032996001 assembled CDS
          Length = 479

 Score =  179 bits (454), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 136/479 (28%), Positives = 251/479 (52%), Gaps = 31/479 (6%)

Query: 55  KFGGTCVGTSERIKNVAEIIVNDGSEGKLVVVSAMSKVTDMMYDLIYKAQSRDDSYIAAV 114
           KFGG+ V ++ER++ VA++I++  +E  ++V+SAM K T+ +     KA S   S  + +
Sbjct: 2   KFGGSSVASAERMREVADLILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVSNASCI 61

Query: 115 DAVFEKHRLTAMDLLDGEDLASFLSRLHHDVNNLKAMLRAIYIAGHATESFSDFVVGHGE 174
           D   E   +  + L   ++L    S +   +  L+ +L+ I +    T    D++V  GE
Sbjct: 62  D---ELTFIKELHLRTADELGVDSSVISAHLEELEQLLKGIAMMKELTLRTKDYLVSFGE 118

Query: 175 LWSAQILSYAVRKSGIDCRWMDTREVLIVNPTSSNQVDPDFVES------EKRLEEWYSQ 228
             S ++ +  + K G   R  D  ++  +  T+ +  + D +E+      ++ L +W S 
Sbjct: 119 CMSTRLFAAYMNKIGAKARQYDAFDIGFI--TTDDFTNADILEATYPAVAKRLLGDWIS- 175

Query: 229 NPCKTIVATGFIASTPQNIP-TTLKRDGSDFSAAIMGALLRAQQVTIWTDVDGVYSADPR 287
           +P   IV TGF+    ++   TTL R GSD +A  +G  L  +++ +W DVDGV + DP 
Sbjct: 176 DPAIPIV-TGFLGKGWRSCAVTTLGRGGSDLTATTLGKALGLREIQVWKDVDGVLTCDPN 234

Query: 288 KVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIMIRNIFNLSSPGTMICQP 347
             S A  +  L++ EA E++YFGA VLHP+++ P    DIP+ ++N +N ++PGT+I + 
Sbjct: 235 IYSHAKPVEYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNRNAPGTLITR- 293

Query: 348 SMNENEDGQKLDSVKGFATIDNVALVNVEGTGMAGIPGTASAIFGAVKDVGANVIMISQA 407
                 D  K   +       NV ++++  T M G  G  + +F   +++G +V ++  A
Sbjct: 294 ----TRDMSKA-VLTSIVLKRNVTMLDIVSTRMLGQFGFLAKVFSIFEELGISVDVV--A 346

Query: 408 SSEHSVCFAV-PEK----EVKAVAETLQSRFREALDVGRLSQVAIIPNCSILAAVGQKMA 462
           +SE S+   + P K    E+   A  L     E   + +++ V ++ + SI++ +G    
Sbjct: 347 TSEVSISLTLDPSKLWSRELIQQASELDHVVEE---LEKIAVVNLLQHRSIISLIGNIQM 403

Query: 463 STPGVSATLFNALAKANINVRAIAQGCSEYNITVVVKREDCIRALKAVHSRFFLSKTTI 521
           S+  +    F+ L    +NV+ I+QG S+ NI+++V  +   + ++A+HS FF S + +
Sbjct: 404 SSL-ILEKAFHVLRTKGVNVQMISQGASKVNISLIVNDDQAEKCVRALHSAFFESLSEV 461