Jatropha Genome Database

JcCB0006821.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0006821.30 + phase: 0 
         (362 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01007672001 assembled CDS                                       282   1e-76
GSVIVT01015902001 assembled CDS                                       186   2e-47

>GSVIVT01007672001 assembled CDS
          Length = 300

 Score =  282 bits (722), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 158/276 (57%), Positives = 184/276 (66%), Gaps = 45/276 (16%)

Query: 1   MTSVQIAPFTPYPVQFSRY---DSPINLKFSLKTPV--QFLPSFSTAAKYQHTHHSNPTN 55
           + S QI PFT  PVQ S +    +P+NLK   KTP   +F P     AK QHTH S    
Sbjct: 8   LASHQIRPFTLPPVQVSLHFLPRAPLNLKLYPKTPSPSRFHP---ITAKAQHTHLST--- 61

Query: 56  PVQSSPKTKISIQSNPKSKTLQTETSVQPNSRNKTRRQEDGIPTEDIQIIAKFKSRYNYI 115
                                           ++TR Q+DGIP + ++I+ KFKSR+NYI
Sbjct: 62  --------------------------------HQTRTQDDGIPVDLVKILVKFKSRHNYI 89

Query: 116 RVLEVSRKVDHPLAGSRLLLLDDPGNIHSISFSHKLLTNTYFDVFATLPPILPPGPVAIL 175
           RVL+VSRK DHP AGSRLLLLD PGNIHSISF  K  T+TYFDV ATLP ILPPGP+ IL
Sbjct: 90  RVLDVSRKADHPFAGSRLLLLDGPGNIHSISFLLKSFTDTYFDVLATLPAILPPGPLGIL 149

Query: 176 GFGAGSAARLILELYQNGRVHGWELDPSVIAVGRKYFGLERLERDFSDRLFIYIGNALSL 235
           GFGAGSAARLILE Y    VHGWELDPSVI VGR+YFGL +LE++   RLFIYIGNAL+ 
Sbjct: 150 GFGAGSAARLILETYPQVVVHGWELDPSVIEVGREYFGLSKLEKEHPHRLFIYIGNALN- 208

Query: 236 ESYVRDGFSGILVDLFSKGSVIPELQDPNTWEEFTR 271
            + VR+GFSGILVDLF KGS+IPELQDP TWE+  +
Sbjct: 209 -ASVRNGFSGILVDLFCKGSLIPELQDPGTWEKLRK 243


>GSVIVT01015902001 assembled CDS
          Length = 328

 Score =  186 bits (471), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 106/280 (37%), Positives = 155/280 (55%), Gaps = 15/280 (5%)

Query: 83  QPNSRNKTRRQEDGIPTEDIQIIAKFKSRYNYIRVLEVSRKVDHPLAGSRLLLLDDPGNI 142
           +P     T + E     ED Q++   KS YN I +L+  +        SRLLLLD   N+
Sbjct: 56  EPTGSASTAQDEQ----EDFQVLTAIKSEYNDILILDTPK--------SRLLLLDSTHNV 103

Query: 143 HSISFSHKLLTNTYFDVFATLPPILPPGPVAILGFGAGSAARLILELYQNGRVHGWELDP 202
           HSI    +  T +Y+D FA+LP I+P GP+AI G G G+AA L+L+L+ + ++ GWE+D 
Sbjct: 104 HSIFNKEEKRTGSYWDEFASLPAIVPEGPIAIFGLGGGTAAHLLLDLWPSLKLEGWEIDE 163

Query: 203 SVIAVGRKYFGLERLER--DFSDRLFIYIGNALSLESYVRDGFSGILVDLFSKGSVIPEL 260
            +I   R+Y GL  LE+       L +++G+ALS    V  GF+GI++DLFS+G V+P+L
Sbjct: 164 ILIHKSREYLGLSDLEKHNQAGGILHVHVGDALSPLVNVPGGFAGIIIDLFSEGKVLPQL 223

Query: 261 QDPNTWEEFTRCLRKGGRIMVNVGGRCV-EAEDKRRDGAVVMQDTLKAMHQVFGDNLFVL 319
           Q   TW      L   GR+MVN GG     A+    +G  V   TLKA+ + F   L   
Sbjct: 224 QQYGTWLILKDKLMANGRLMVNCGGADYNSAQISSINGVWVKNSTLKALCRAFPGQLSWK 283

Query: 320 SLGSQNDDSTIALTGELPDLDAWKSVVPRSLRFYMDMWTP 359
            +  +  ++ +ALTG  PDL +W + VP  L   ++ W P
Sbjct: 284 KMSEREGENYLALTGPFPDLKSWSATVPGWLSSNVEQWRP 323