Jatropha Genome Database

JcCB0006821.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0006821.20 + phase: 0 /partial
         (272 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01007671001 assembled CDS                                       462   e-131
GSVIVT01023839001 assembled CDS                                       338   2e-93
GSVIVT01030885001 assembled CDS                                       336   6e-93
GSVIVT01018365001 assembled CDS                                       284   3e-77
GSVIVT01031375001 assembled CDS                                       283   8e-77
GSVIVT01008242001 assembled CDS                                        93   1e-19
GSVIVT01036156001 assembled CDS                                        88   4e-18
GSVIVT01007870001 assembled CDS                                        82   3e-16
GSVIVT01026467001 assembled CDS                                        74   9e-14

>GSVIVT01007671001 assembled CDS
          Length = 365

 Score =  462 bits (1190), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 220/272 (80%), Positives = 236/272 (86%)

Query: 1   RVLYVDIDVHHGDGVEEAFYTTDRVMTVSFHKFGDFFPGTGHIKDTGAGQGKNYALNIPL 60
           RVLYVDID+HHGDGVEEAF+TTDRVMTVSFHKFGDFFPGTGHI+D G G GK YALN+PL
Sbjct: 82  RVLYVDIDIHHGDGVEEAFFTTDRVMTVSFHKFGDFFPGTGHIRDIGVGPGKYYALNVPL 141

Query: 61  NDGMDDESFRGLFRPIIQKVMEIYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFL 120
           NDGMDDESFRGLFRPIIQKVM +YQPDAVVLQCGADSLSGDRLGCFNLSV GHADCLRFL
Sbjct: 142 NDGMDDESFRGLFRPIIQKVMAVYQPDAVVLQCGADSLSGDRLGCFNLSVNGHADCLRFL 201

Query: 121 RSFNVPLMVLGGGGYTIRNVARCWCYETAIAVGVEPDNKLPYNEYYEYFGPDYTLHIEPS 180
           RSFNVPLMVLGGGGYTIRNVARCWCYETA+AVGVEPDNKLPYNEYYEYFGPDYTLHIEP 
Sbjct: 202 RSFNVPLMVLGGGGYTIRNVARCWCYETAVAVGVEPDNKLPYNEYYEYFGPDYTLHIEPC 261

Query: 181 NMENLNSPKDMERIRNILLEQLSKLPNAPSVPFQXXXXXXXXXXXXXXDMDRRPKRRIWN 240
           NMEN NSPKD+E+IRN+LLEQLS+LP+APSVPFQ              DMD+RPK RIWN
Sbjct: 262 NMENQNSPKDLEKIRNMLLEQLSRLPHAPSVPFQTTPPITKVPEEEEEDMDKRPKPRIWN 321

Query: 241 GEDYESDPDEDGELRPRRLNNDSRAVAKDEMR 272
           GED ESDPDED + R +  N +    +  EMR
Sbjct: 322 GEDCESDPDEDEKPRAQFSNTNHHPTSNVEMR 353


>GSVIVT01023839001 assembled CDS
          Length = 394

 Score =  338 bits (867), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 161/214 (75%), Positives = 193/214 (90%)

Query: 1   RVLYVDIDVHHGDGVEEAFYTTDRVMTVSFHKFGDFFPGTGHIKDTGAGQGKNYALNIPL 60
           RVLYVDID+HHGDGVEEAFYTTDRVMTVSFHKFGD+FPGTG I+D G G+GK Y+LN+PL
Sbjct: 69  RVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFPGTGDIRDIGFGKGKYYSLNVPL 128

Query: 61  NDGMDDESFRGLFRPIIQKVMEIYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFL 120
           +DG+DDES+  LF+PII KVME+++P AVVLQCGADSLSGDRLGCFNLS+KGHA+C+R++
Sbjct: 129 DDGIDDESYHFLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVRYM 188

Query: 121 RSFNVPLMVLGGGGYTIRNVARCWCYETAIAVGVEPDNKLPYNEYYEYFGPDYTLHIEPS 180
           RSFNVPL++LGGGGYTIRNVARCWCYET +A+G+E D+K+P +EYYEYFGPDYTLH+ PS
Sbjct: 189 RSFNVPLLLLGGGGYTIRNVARCWCYETGVALGIEVDDKMPQHEYYEYFGPDYTLHVAPS 248

Query: 181 NMENLNSPKDMERIRNILLEQLSKLPNAPSVPFQ 214
           NMEN NS + ++ IR  LL+ LSKL +APSV FQ
Sbjct: 249 NMENKNSHQILDEIRAKLLDNLSKLRHAPSVQFQ 282


>GSVIVT01030885001 assembled CDS
          Length = 502

 Score =  336 bits (862), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 162/214 (75%), Positives = 192/214 (89%)

Query: 1   RVLYVDIDVHHGDGVEEAFYTTDRVMTVSFHKFGDFFPGTGHIKDTGAGQGKNYALNIPL 60
           RVLYVDID+HHGDGVEEAFYTTDRVMTVSFHKFGD+FPGTG I+D G G+GK Y+LN+PL
Sbjct: 177 RVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFPGTGDIRDIGFGKGKYYSLNVPL 236

Query: 61  NDGMDDESFRGLFRPIIQKVMEIYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFL 120
           +DG+DDES+  LF+PII KVMEI++P AVVLQCGADSLSGDRLGCFNLS+KGHA+C+RF+
Sbjct: 237 DDGIDDESYHCLFKPIIGKVMEIFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVRFM 296

Query: 121 RSFNVPLMVLGGGGYTIRNVARCWCYETAIAVGVEPDNKLPYNEYYEYFGPDYTLHIEPS 180
           RSFNVPL++LGGGGYTIRNVARCWCYET +A+G+E D+K+P +EYYEYFGPDYTLH+ PS
Sbjct: 297 RSFNVPLLLLGGGGYTIRNVARCWCYETGVALGIEVDDKMPQHEYYEYFGPDYTLHVAPS 356

Query: 181 NMENLNSPKDMERIRNILLEQLSKLPNAPSVPFQ 214
           NMEN NS + ++ IR  LL+ LS L +APSV FQ
Sbjct: 357 NMENKNSHQLLDEIRAKLLDNLSTLRHAPSVQFQ 390


>GSVIVT01018365001 assembled CDS
          Length = 430

 Score =  284 bits (727), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 134/215 (62%), Positives = 167/215 (77%), Gaps = 1/215 (0%)

Query: 1   RVLYVDIDVHHGDGVEEAFYTTDRVMTVSFHKFGD-FFPGTGHIKDTGAGQGKNYALNIP 59
           RVLY+DIDVHHGDGVEEAFY TDRVMTVSFHK+GD FFPGTG +K+TG  +GK YA+N+P
Sbjct: 165 RVLYIDIDVHHGDGVEEAFYFTDRVMTVSFHKYGDKFFPGTGDVKETGEREGKFYAINVP 224

Query: 60  LNDGMDDESFRGLFRPIIQKVMEIYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLRF 119
           L DG+DD SF  LF+ II KV+E YQP  +VLQCGADSL+GDRLGCFNLS+ GHA+C+RF
Sbjct: 225 LKDGIDDTSFTRLFKTIIAKVVETYQPGVIVLQCGADSLAGDRLGCFNLSIDGHAECVRF 284

Query: 120 LRSFNVPLMVLGGGGYTIRNVARCWCYETAIAVGVEPDNKLPYNEYYEYFGPDYTLHIEP 179
           ++ FN+PL+V GGGGYT  NVARCW  ET + +  E  N++P NEY +YF P+Y+L I  
Sbjct: 285 VKKFNLPLLVTGGGGYTKENVARCWTVETGVLLDTELPNEIPENEYIKYFAPEYSLKIPN 344

Query: 180 SNMENLNSPKDMERIRNILLEQLSKLPNAPSVPFQ 214
            ++ENLNS   +  I+  +LE L  + +APSV  Q
Sbjct: 345 GHIENLNSKSYIGTIKMQVLENLRCIQHAPSVQMQ 379


>GSVIVT01031375001 assembled CDS
          Length = 430

 Score =  283 bits (723), Expect = 8e-77,   Method: Compositional matrix adjust.
 Identities = 133/215 (61%), Positives = 167/215 (77%), Gaps = 1/215 (0%)

Query: 1   RVLYVDIDVHHGDGVEEAFYTTDRVMTVSFHKFGD-FFPGTGHIKDTGAGQGKNYALNIP 59
           RVLY+DIDVHHGDGVEEAFY TDRVMTVSFHK+GD FFPGTG +K+ G  +GK YA+N+P
Sbjct: 165 RVLYIDIDVHHGDGVEEAFYFTDRVMTVSFHKYGDMFFPGTGDVKEIGEREGKFYAINVP 224

Query: 60  LNDGMDDESFRGLFRPIIQKVMEIYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLRF 119
           L DG+DD SF  LF+ II KV+EIYQP  +VLQCGADSL+GDRLGCFNLS+ GHA+C+R 
Sbjct: 225 LKDGIDDTSFTRLFKTIIAKVVEIYQPGVIVLQCGADSLAGDRLGCFNLSIDGHAECVRI 284

Query: 120 LRSFNVPLMVLGGGGYTIRNVARCWCYETAIAVGVEPDNKLPYNEYYEYFGPDYTLHIEP 179
           ++ FN+PL+V GGGGYT  NVARCW  ET + +  E  N++P NEY +YFGP+++L I  
Sbjct: 285 VKKFNLPLLVTGGGGYTKENVARCWTVETGVLLDTELPNEIPENEYIKYFGPEHSLKIPN 344

Query: 180 SNMENLNSPKDMERIRNILLEQLSKLPNAPSVPFQ 214
            ++ENLNS   +  I+  +LE L  + +APSV  Q
Sbjct: 345 GHIENLNSKSYLGTIKQQVLENLRCIQHAPSVQMQ 379


>GSVIVT01008242001 assembled CDS
          Length = 697

 Score = 92.8 bits (229), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 54/169 (31%), Positives = 88/169 (52%), Gaps = 8/169 (4%)

Query: 1   RVLYVDIDVHHGDGVEEAFYTTDRVMTVSFHKF--GDFFPGTGHIKDTGAGQGKNYALNI 58
           RVL VD DVHHG+G +E F     V+ +S H+   G+F+PGTG   + G+   + Y +NI
Sbjct: 449 RVLIVDWDVHHGNGTQEIFEQNKSVLYISLHRHEGGNFYPGTGASHEVGSMGAEGYCVNI 508

Query: 59  PLN-DGMDDESFRGLFRPIIQKVMEIYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCL 117
           P +  G+ D  +   F+ ++  +   + PD  ++  G D+  GD LGC +++  G A   
Sbjct: 509 PWSRGGVGDNDYIFAFQHVVLPIASEFAPDFTIISAGFDAARGDPLGCCDVTPAGFAKMT 568

Query: 118 RFLRSFN-VPLMVLGGGGYTIRNVARCWCYETAIAVGVEP----DNKLP 161
             L   +   L+V+  GGY +R+++        + +G  P    DN LP
Sbjct: 569 DMLNVLSGGKLLVILEGGYNLRSISSSATAVIKVLLGETPGCELDNCLP 617


>GSVIVT01036156001 assembled CDS
          Length = 348

 Score = 88.2 bits (217), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 48/152 (31%), Positives = 83/152 (54%), Gaps = 9/152 (5%)

Query: 1   RVLYVDIDVHHGDGVEEAFYTTDRVMTVSFH----KFGDFFPGTGHIKDTGAGQGKNYAL 56
           +V  +DIDVH+G+G  E FY +D+V+T+S H     +G   P +G + + G G+G  Y L
Sbjct: 146 KVAVIDIDVHYGNGTAEGFYHSDKVLTISLHMNHGSWGPSHPQSGSVDEIGVGEGFGYNL 205

Query: 57  NIPLNDGMDDESFRGLFRPIIQKVMEIYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADC 116
           NIPL +G  D  +      ++   ++ Y+P+ +VL  G DS + D  G   L+++G+ + 
Sbjct: 206 NIPLPNGTGDRGYAYAMNQLVVPAIQKYEPEMMVLVVGQDSSAFDPNGRQCLTMEGYREI 265

Query: 117 LRFLRSF-----NVPLMVLGGGGYTIRNVARC 143
            + +R       +  L+++  GGY +   A C
Sbjct: 266 GQIVRKLADKYSDGHLLIVQEGGYQVTYSAYC 297


>GSVIVT01007870001 assembled CDS
          Length = 646

 Score = 82.0 bits (201), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 47/147 (31%), Positives = 81/147 (55%), Gaps = 6/147 (4%)

Query: 1   RVLYVDIDVHHGDGVEEAFYTTDRVMTVSFHK--FGDFFPGT--GHIKDTGAGQGKNYAL 56
           ++L VD DVHHG+G ++ F+   RV+  S H+  FG F+P    G    TG G G  Y +
Sbjct: 176 KILIVDWDVHHGNGTQKMFWKDPRVLFFSVHRHEFGSFYPANDEGFYAMTGEGPGAGYNI 235

Query: 57  NIPLNDG-MDDESFRGLFRPIIQKVMEIYQPDAVVLQCGADSLSGDRLGCFNLSVKGHAD 115
           N+P  +G   D  +  ++  I+  V + + PD V++  G D+  GD LG  +++  G++ 
Sbjct: 236 NVPWENGRCGDADYLAVWDHILIPVAKDFNPDIVIISAGFDAAIGDPLGGCHVTPYGYSV 295

Query: 116 CLRFLRSFNVPLMVLG-GGGYTIRNVA 141
            L+ L  F+   +++   GGY + ++A
Sbjct: 296 MLKKLMEFSEGKIIMALEGGYNLVSLA 322


>GSVIVT01026467001 assembled CDS
          Length = 437

 Score = 73.6 bits (179), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 38/110 (34%), Positives = 58/110 (52%), Gaps = 1/110 (0%)

Query: 1   RVLYVDIDVHHGDGVEEAFYTTDRVMTVSFHKFGDFFPGTGHIKDTGAGQGKNYALNIPL 60
           RV  +D DVHHG+G  +AFY    +  +S H+ G + PGTG I + G G G+   LN+PL
Sbjct: 246 RVFIIDFDVHHGNGTNDAFYDDPDIFFLSTHQDGSY-PGTGKIDEVGHGSGEGATLNLPL 304

Query: 61  NDGMDDESFRGLFRPIIQKVMEIYQPDAVVLQCGADSLSGDRLGCFNLSV 110
             G  D + R +F  +I    + ++PD +++  G D    D L     + 
Sbjct: 305 PGGSGDIAMRTVFDEVIVPSAQRFKPDIILVSAGYDGHVLDPLASLQFTT 354