Jatropha Genome Database

JcCB0006421.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0006421.30 + phase: 0 /partial
         (233 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01009890001 assembled CDS                                       162   1e-40
GSVIVT01033931001 assembled CDS                                       113   9e-26
GSVIVT01036059001 assembled CDS                                       110   5e-25

>GSVIVT01009890001 assembled CDS
          Length = 436

 Score =  162 bits (411), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 106/190 (55%), Positives = 124/190 (65%), Gaps = 17/190 (8%)

Query: 52  NPAFISSFHKPQ----YGHPSDNNKSNQLSNNIPFAFQLHAEETHSAFSKLAQLKQTNEK 107
           NP F SS  KP     +  P   N S+ +S+        H+++  SAF KL  LKQTNE 
Sbjct: 27  NPFFPSSQRKPHLFPFFSCPM--NDSSFVSDT---RTHCHSDDRQSAFVKLP-LKQTNEI 80

Query: 108 VNHEAQYGGQEPFAKHN---KVPNHVLDPQSATRSKRI-NRAKVSKNGKLGIQGSNAESP 163
            + + Q   Q     H    K P+  L+P+S    K+  +++KVSKN K G Q SNAESP
Sbjct: 81  DHCKGQTSRQATLDGHGEEMKFPS--LEPESCVGGKQQHSKSKVSKNAKSGAQRSNAESP 138

Query: 164 NGLNPATGCRYDSSLGLLTRKFVKLIQEDKDGTLDLNRTADVLEVVQKRRIYDITNVLEG 223
           N LNP   CRYDSSLGLLT+KF+ LIQE KDGTLDLNRTADVLE VQKRRIYDITNVLEG
Sbjct: 139 NILNPVVTCRYDSSLGLLTKKFISLIQEAKDGTLDLNRTADVLE-VQKRRIYDITNVLEG 197

Query: 224 ISLIEKTSKN 233
           I LIEKTSKN
Sbjct: 198 IGLIEKTSKN 207


>GSVIVT01033931001 assembled CDS
          Length = 466

 Score =  113 bits (282), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 62/103 (60%), Positives = 73/103 (70%), Gaps = 3/103 (2%)

Query: 133 PQSATRSKRINRAKVSKNGKLGIQG--SNAESPNGLNPATGCRYDSSLGLLTRKFVKLIQ 190
           P S    +  +++KVSK    G Q   SNA SP+ L PA  CRYDSSLGLLT+KF+ LI+
Sbjct: 102 PVSGKGGRIYSKSKVSKGNVCGPQTPVSNAGSPSTLTPAGNCRYDSSLGLLTKKFINLIK 161

Query: 191 EDKDGTLDLNRTADVLEVVQKRRIYDITNVLEGISLIEKTSKN 233
             +DG LDLN+ A+ LE VQKRRIYDITNVLEGI LIEK  KN
Sbjct: 162 HAEDGILDLNKAAETLE-VQKRRIYDITNVLEGIGLIEKKLKN 203


>GSVIVT01036059001 assembled CDS
          Length = 446

 Score =  110 bits (276), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 72/149 (48%), Positives = 89/149 (59%), Gaps = 6/149 (4%)

Query: 89  EETHSAFSKLAQLKQTNEKVNHEAQYGGQEPFAKHNKVPNH-VLDPQSATRSKRINRAKV 147
           E   +   K  QLK+ +E  ++EA+           +V N  V  P S    K    +++
Sbjct: 37  EADEAVVVKSPQLKRKSEP-DYEAESSEWTAVPGFTEVVNSPVQTPVSGKGGKAQKTSRI 95

Query: 148 SKNGKLGIQG--SNAESP-NGLNPATGCRYDSSLGLLTRKFVKLIQEDKDGTLDLNRTAD 204
           +K  + G Q   SNA SP N L P   CRYDSSLGLLT+KF+ LI+  +DG LDLN+ AD
Sbjct: 96  TKCSRSGPQTPVSNAGSPGNNLTPVGPCRYDSSLGLLTKKFINLIKHAEDGILDLNKAAD 155

Query: 205 VLEVVQKRRIYDITNVLEGISLIEKTSKN 233
            LE VQKRRIYDITNVLEGI LIEK  KN
Sbjct: 156 TLE-VQKRRIYDITNVLEGIGLIEKKLKN 183