Jatropha Genome Database

JcCB0006421.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0006421.20 + phase: 0 
         (427 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01009891001 assembled CDS                                       595   e-170

>GSVIVT01009891001 assembled CDS
          Length = 464

 Score =  595 bits (1533), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 294/440 (66%), Positives = 348/440 (79%), Gaps = 22/440 (5%)

Query: 1   MSQNNLESDSLQNPRVTWEGCSVLLDINDGDRLVFSRLTPGSNLKIGNKNLSLRPLIGCP 60
           MSQN+L++DS+QNPRVTWEGCSVLLDINDGDRLVF+RL+  + LKIGNKN SL+PLIGCP
Sbjct: 1   MSQNSLQNDSIQNPRVTWEGCSVLLDINDGDRLVFARLSASATLKIGNKNCSLQPLIGCP 60

Query: 61  FGSLFQIENGKEGPCLSRFIPSKQADLYNACYLGNNAEEKSDCEMIDESRDNRALIDNNK 120
           FGSLFQ++NG  GP LSR  PS +         GN+ +E  DC++ DE +DNRA++DNNK
Sbjct: 61  FGSLFQVDNGPRGPYLSRVTPSAE---------GNDLQETQDCQLKDEPKDNRAIVDNNK 111

Query: 121 AQSLTGDDIDAMRRQGAKGEEIIDALIANSATFEKKTLFSQEKYRLKKQKKYAPRVLLRR 180
           AQSLTG+DID MRRQGA G+EI++ALI+NSAT+EKKT FSQEKYRLKKQKKY+PRVLLRR
Sbjct: 112 AQSLTGEDIDEMRRQGATGDEIVEALISNSATYEKKTSFSQEKYRLKKQKKYSPRVLLRR 171

Query: 181 PFTRSICETYFKKYPARIGYLRIDALSLLLSMANVTANSDILVMDMVGGLLTGAVAERLG 240
           PF RSICE YFKKYPARIG+LR+D LSLLLSMAN+ A+SD+LV+DMVGGLLTGAVAERLG
Sbjct: 172 PFCRSICEAYFKKYPARIGFLRVDTLSLLLSMANIAAHSDVLVVDMVGGLLTGAVAERLG 231

Query: 241 GTGYVCSTYLGDTPHSVDIVRMFNFNNDICKRIVRASLSDLCLAQNETSNQSCAHE---D 297
           GTGYVC+ YLGDTP+ +DIVR+FNF+++ICKRIVR+ +  L   Q+ TS Q   H+   +
Sbjct: 232 GTGYVCNAYLGDTPYPMDIVRIFNFSSEICKRIVRSPVDGLRSIQDGTSEQFFQHKGVSN 291

Query: 298 APMESNGQTXXX-----XXXXXXXXXXPEAADIDPDP---TASP--ASKISKVHKAGERA 347
           + ++SN Q                    E   +D  P   TASP   +K  K  KAGE A
Sbjct: 292 SEIQSNEQMSSQDSFPHSISTEETTLSSENGMLDLIPQMVTASPPQVAKTCKATKAGENA 351

Query: 348 TDEALKLWKENGFSSLIIAAPDLDPWSLVNEILPLLSYSAPFAIYHQYLQPLATCMHNLQ 407
           + +A+ LWKENGFSSL+IAAP+LD WS+V E LP LSYSA FAIYHQYLQPLATCMHNLQ
Sbjct: 352 SLDAINLWKENGFSSLLIAAPELDVWSIVQEFLPFLSYSASFAIYHQYLQPLATCMHNLQ 411

Query: 408 LGKMAIGLQISEPWLREYQV 427
           LGKMAIGLQISEPWLREYQV
Sbjct: 412 LGKMAIGLQISEPWLREYQV 431