Jatropha Genome Database

JcCB0006421.10

BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0006421.10 - phase: 0 
         (211 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01009892001 assembled CDS                                       111   3e-25
GSVIVT01008925001 assembled CDS                                        87   5e-18

>GSVIVT01009892001 assembled CDS
          Length = 412

 Score =  111 bits (277), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 48/53 (90%), Positives = 51/53 (96%)

Query: 139 MQFRKLSGCYECHMIVDPSRYPTPRTTICACSHCGEVFPKSESLELHQKVRHA 191
           MQFRKLSGCYECHMIVDP+RYP+PRTTICACS CGEVFPK+ESLELHQ VRHA
Sbjct: 1   MQFRKLSGCYECHMIVDPNRYPSPRTTICACSECGEVFPKTESLELHQAVRHA 53


>GSVIVT01008925001 assembled CDS
          Length = 303

 Score = 87.4 bits (215), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 40/62 (64%), Positives = 48/62 (77%), Gaps = 4/62 (6%)

Query: 134 SSSRGMQFRKLSGCYECHMIVDP----SRYPTPRTTICACSHCGEVFPKSESLELHQKVR 189
            S RGM FR+LSGCYEC M+VDP    +R P+ RTTIC+C  CGE+F K+E+LELHQ VR
Sbjct: 31  GSFRGMPFRRLSGCYECRMVVDPVLGITRDPSLRTTICSCPDCGEIFMKAENLELHQAVR 90

Query: 190 HA 191
           HA
Sbjct: 91  HA 92