Jatropha Genome Database

JcCB0006311.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0006311.10 + phase: 0 
         (356 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01001426001 assembled CDS                                       545   e-155
GSVIVT01036594001 assembled CDS                                       497   e-141
GSVIVT01015513001 assembled CDS                                       160   1e-39

>GSVIVT01001426001 assembled CDS
          Length = 358

 Score =  545 bits (1404), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 252/356 (70%), Positives = 307/356 (86%), Gaps = 2/356 (0%)

Query: 1   MTIKTKGLIERNFPEELKKVLQSVASEWGDVVDDMNSLQVIPLKGAMTNEVFQINWPTKN 60
           MT+K  GL +    EEL+K+L S+AS WGDVVDD   L+VIPLKGAMTNE++QINWP + 
Sbjct: 1   MTVKNNGLSKGCVSEELRKLLISLASSWGDVVDDPKKLRVIPLKGAMTNEIYQINWPIEA 60

Query: 61  GDIIRKLLIRIYGEGVEMFFRRDDEIRTFECMSKNGQGPRLLGRFADGRVEEFIHARTLS 120
           G   R +L+R+YGEGVE+FF RDDEIRTFECMS++G GPRLLGRFADGRVEEFIHA+TLS
Sbjct: 61  G--TRSVLVRVYGEGVEVFFDRDDEIRTFECMSEHGHGPRLLGRFADGRVEEFIHAKTLS 118

Query: 121 AADLRDPEISALVAEKMREFHDLDMPGPKKVLLWSRMRDWLAEAKCLCSAKDAKQFHLDS 180
           AADLRDPEISALVA K+REFH L+MPGPK V LW RMR+W+ EAK L S KDAK+F LD+
Sbjct: 119 AADLRDPEISALVAAKLREFHRLEMPGPKNVFLWDRMRNWVGEAKRLSSPKDAKEFCLDT 178

Query: 181 LEDEINMLEKQLSQEYQEIRFCHNDLQYGNIMMDEETRSITIIDYEYSSYNPVAYDIANH 240
           LE+EI+ML+K+ SQ++Q+I FCHNDLQYGNIM+DE+TR+ITIIDYEY+SYNPVAYD+ANH
Sbjct: 179 LEEEISMLQKEFSQDHQDIGFCHNDLQYGNIMIDEKTRAITIIDYEYASYNPVAYDLANH 238

Query: 241 FCEMVADYHSDTPHILDYSRYPGLEERCRFVRAYLSSAGEKPSEDEVEQLVNDAEKYTLA 300
           FCEMVA+YH+DTPHILDYS+YP  EER RF+R YLSSAG +PS+ EVE+L  DAEKYTLA
Sbjct: 239 FCEMVANYHTDTPHILDYSKYPDQEERHRFIRTYLSSAGNQPSDSEVEKLACDAEKYTLA 298

Query: 301 NHLLWGLWGIISGYVNTLDFDYLEYARERFEQYWLRKHELLGSFDVQANGYVVDAT 356
           NHL WG+WGIISG+VNT++F+Y+EYAR+RF+QYWLRK  LLGS   +++  + D++
Sbjct: 299 NHLFWGIWGIISGHVNTIEFNYMEYARQRFQQYWLRKPLLLGSSKARSDSVINDSS 354


>GSVIVT01036594001 assembled CDS
          Length = 463

 Score =  497 bits (1279), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 232/342 (67%), Positives = 282/342 (82%), Gaps = 1/342 (0%)

Query: 13  FPEELKKVLQSVASEWGDVVDDMNSLQVIPLKGAMTNEVFQINWPTKNGDIIRKLLIRIY 72
            P E +++L S+AS W D V D N+LQVIPLKGAMTNEV+QI WPT  G+  RK+L+RIY
Sbjct: 115 LPGEARRILLSLASSW-DNVTDSNALQVIPLKGAMTNEVYQIKWPTSTGETSRKVLVRIY 173

Query: 73  GEGVEMFFRRDDEIRTFECMSKNGQGPRLLGRFADGRVEEFIHARTLSAADLRDPEISAL 132
           GEGVE+FF R  EI+TFE +SK+GQGPRLLGRF +GR+EEFIHARTLSAADL DP+IS L
Sbjct: 174 GEGVEVFFDRASEIQTFEFISKHGQGPRLLGRFPNGRIEEFIHARTLSAADLHDPDISDL 233

Query: 133 VAEKMREFHDLDMPGPKKVLLWSRMRDWLAEAKCLCSAKDAKQFHLDSLEDEINMLEKQL 192
           +A KM+EFHDL+MPGPK V+LW RMRDWL+ AK L S ++A  F LD++E+EI++LEK+L
Sbjct: 234 IAIKMKEFHDLNMPGPKDVVLWDRMRDWLSAAKNLSSPEEANTFQLDAIEEEISLLEKKL 293

Query: 193 SQEYQEIRFCHNDLQYGNIMMDEETRSITIIDYEYSSYNPVAYDIANHFCEMVADYHSDT 252
              +  I FCHNDLQYGNIM+DEET  ITIIDYEY+SYNPV YDIANHFCEM ADYH++T
Sbjct: 294 PGNHLHIGFCHNDLQYGNIMIDEETSLITIIDYEYASYNPVTYDIANHFCEMAADYHTET 353

Query: 253 PHILDYSRYPGLEERCRFVRAYLSSAGEKPSEDEVEQLVNDAEKYTLANHLLWGLWGIIS 312
           PHILDYS+YP LE+R RF+R YL  AG++P++ E+E LV D EKYTLA+HLLWGLWGIIS
Sbjct: 354 PHILDYSKYPSLEKRQRFLRIYLGHAGDQPNDLELEVLVQDVEKYTLASHLLWGLWGIIS 413

Query: 313 GYVNTLDFDYLEYARERFEQYWLRKHELLGSFDVQANGYVVD 354
            +VN +DF+Y+EYAR+RFEQYWLRK ELLGS    ++G   D
Sbjct: 414 EHVNEIDFNYMEYARQRFEQYWLRKPELLGSSGPASDGTTGD 455


>GSVIVT01015513001 assembled CDS
          Length = 308

 Score =  160 bits (404), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 90/265 (33%), Positives = 149/265 (56%), Gaps = 17/265 (6%)

Query: 85  EIRTFECMSKNGQGPRLLGRFADGRVEEFIHARTLSAADLRDPEISALVAEKMREFHDLD 144
           E+     +S  G G +LLG F +G V+ FI+ARTL+ +D++ P+++A +A+++R+FH ++
Sbjct: 40  ELHAIGYLSAAGFGAKLLGVFGNGMVQSFINARTLTPSDMKMPKLAAEIAKQLRKFHQVE 99

Query: 145 MPGPKKVLLWSRMRDWLAEAKCLC-----SAKDAKQFHLDSLEDEINMLEKQLSQEYQEI 199
           +PG K+  LW  +  +  +A  L        K  K+   + + +E+  L++        +
Sbjct: 100 IPGSKEPQLWIDIFKFFEKASTLKFDDIEKQKKYKEISFEEVHNEVVELKELTDCLNSPV 159

Query: 200 RFCHNDLQYGNIMMDEETRSITIIDYEYSSYNPVAYDIANHFCEMVADYHSDTPHILDYS 259
            F HNDL  GN+M++++   +  ID+EY SY+   +DI NHF E          +  DYS
Sbjct: 160 VFAHNDLLSGNLMLNDDEGKLYFIDFEYGSYSYRGFDIGNHFNEYAG-------YDCDYS 212

Query: 260 RYPGLEERCRFVRAYLSSAGEKP---SEDEVEQLVNDAEKYTLANHLLWGLWGIISGYVN 316
            YP   E+  F R YL  A +KP   S+ ++E L  +A  + LA+HL W LW +I   ++
Sbjct: 213 LYPTKNEQYHFFRHYL--APDKPNEVSDKDLETLYVEANTFMLASHLYWALWALIQAKMS 270

Query: 317 TLDFDYLEYARERFEQYWLRKHELL 341
            +DFDYL Y   R+E+Y  +K + L
Sbjct: 271 PIDFDYLGYYFLRYEEYTKQKEKCL 295