Jatropha Genome Database

JcCB0005881.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0005881.10 - phase: 0 
         (429 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01008478001 assembled CDS                                       715   0.0  
GSVIVT01026142001 assembled CDS                                        50   1e-06

>GSVIVT01008478001 assembled CDS
          Length = 366

 Score =  715 bits (1845), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/367 (92%), Positives = 355/367 (96%), Gaps = 1/367 (0%)

Query: 63  MPNPFVIGSGPPGTNYTVMKRAFDEGWGAVIAKTVSLDASKVINVTPRYARLRAGANGSA 122
           MPNPFVIGSGPPGTNYTVMKRAFDEGWGAVIAKTVSLDA+KVINVTPRYARLR GANGSA
Sbjct: 1   MPNPFVIGSGPPGTNYTVMKRAFDEGWGAVIAKTVSLDAAKVINVTPRYARLRVGANGSA 60

Query: 123 KGQIIGWENIELISDRPLETMLSEFKRLKEEYPERILIASIMEEYDKAAWEELIDRVEQT 182
           KGQIIGWENIELISDRPLETML EFK+LKEEYP+RILIASIMEEYDKAAWEELIDRVEQT
Sbjct: 61  KGQIIGWENIELISDRPLETMLKEFKQLKEEYPDRILIASIMEEYDKAAWEELIDRVEQT 120

Query: 183 GIDAIEVNFSCPHGMPERKMGAAVGQDCVLLEEVCGWVNAKATVPVWAKMTPNITDITQP 242
           GIDA+E+NFSCPHGMPERKMGAAVGQDC LLEEVCGW+NAKATVPVWAKMTPNITDITQP
Sbjct: 121 GIDALEINFSCPHGMPERKMGAAVGQDCALLEEVCGWINAKATVPVWAKMTPNITDITQP 180

Query: 243 ARVALSSGCEGVAAINTIMSVMGINLKTLRPEPCVEGYSTPGGYSSKAVHPIALGKVMNI 302
           ARVALSSGCEGV+AINTIMSVMGINL TLRPEPCVEGYSTPGGYS KAVHPIALGKVM+I
Sbjct: 181 ARVALSSGCEGVSAINTIMSVMGINLNTLRPEPCVEGYSTPGGYSCKAVHPIALGKVMSI 240

Query: 303 AKMMKSEFNLEQYSLSGIGGVETGNDAAEFILLGASTVQVCTGVMMHGYGLVKKLCEELK 362
           AKMMK+EF  E YSLSGIGGVETG DAAEFILLGA+TVQVCTGVMMHGYGLVKKLC ELK
Sbjct: 241 AKMMKAEFG-EDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMMHGYGLVKKLCSELK 299

Query: 363 DFMKMHNFSSIEDFRGASLDYFTTHTDLVRRQKEAIELRKAVKKGLQSDKDWTGDGFVKE 422
           DFMKMHNFSSIEDFRGASL+YFTTHTDLV+RQ+EAI  RKA+++GLQSDKDWTGDGFVKE
Sbjct: 300 DFMKMHNFSSIEDFRGASLEYFTTHTDLVQRQQEAIRQRKAIRQGLQSDKDWTGDGFVKE 359

Query: 423 TESMVSN 429
           +ESMVSN
Sbjct: 360 SESMVSN 366


>GSVIVT01026142001 assembled CDS
          Length = 442

 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 75/157 (47%), Gaps = 18/157 (11%)

Query: 227 PVWAKMTPNIT--DITQPARVALSSGCEGVAAINTIMSVMGINLKTLRPEPCVEGYSTPG 284
           P+  K+ P+++  D+   A V+L+   +G+   NT +S       ++R  P  E     G
Sbjct: 297 PLLVKIAPDLSKEDLEDIAAVSLALRLDGLIISNTTIS----RPDSVRQNPVAE---ESG 349

Query: 285 GYSSKAVHPIALGKVMNIAKMMKSEFNLEQ--YSLSGIGGVETGNDAAEFILLGASTVQV 342
           G S K +  ++         M+K  + L +    L G GG+ +G DA + I  GA+ VQ+
Sbjct: 350 GLSGKPLFNLS-------TNMLKEMYVLTRGRIPLIGCGGISSGEDAYKKIRAGATLVQL 402

Query: 343 CTGVMMHGYGLVKKLCEELKDFMKMHNFSSIEDFRGA 379
            T     G  L+ ++  EL ++++   F SI +  GA
Sbjct: 403 YTQFAYEGPALIPQIKAELAEYLERDGFKSIHEAVGA 439