Jatropha Genome Database

JcCB0005461.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0005461.20 - phase: 0 
         (170 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01027929001 assembled CDS                                       141   1e-34
GSVIVT01027930001 assembled CDS                                       121   2e-28

>GSVIVT01027929001 assembled CDS
          Length = 199

 Score =  141 bits (356), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 68/149 (45%), Positives = 95/149 (63%), Gaps = 3/149 (2%)

Query: 1   MEEISETAKAYYANVSEKQKRLAKDLFNEMDKDGDGKITFDEYEQYIKHKKGYKTISTPD 60
           MEEI E A AYY   +++QK+LA   F  +D DGDG ++  E+  +++  +GY+    P+
Sbjct: 1   MEEIREAALAYYEAGTQEQKQLAWAFFQTLDVDGDGTVSVQEFVNFLR-GRGYRLFDNPN 59

Query: 61  FFKKFDEDGNGTLDFDEIVTVHYICASQRIFFCDECRVFLDGVYFTCVQCFNGSGNTYDL 120
           F++  D DGNG LDF E++T  YI  S R F CD C +FL G++FTC+ C+  S  T+DL
Sbjct: 60  FYRALDRDGNGCLDFHEVLTFFYIIKSGRPF-CDGCGIFLKGLFFTCLNCYESSHTTFDL 118

Query: 121 CISCYRDKDINHHKDALFLDNYTLLQSNR 149
           C +CYR K  +H   A+ LDNYTLL   R
Sbjct: 119 CSACYRGKRFSHQHAAI-LDNYTLLTHKR 146


>GSVIVT01027930001 assembled CDS
          Length = 457

 Score =  121 bits (303), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 61/150 (40%), Positives = 96/150 (64%), Gaps = 5/150 (3%)

Query: 4   ISETAKAYYANVSEKQKRLAKDLFNEMDKDGDGKITFDEYEQYIKHKKGYKTISTPDFFK 63
           + E A AYY   +E  K+LA D FN MD +GD ++   EY  + + K+GY  +S  ++F+
Sbjct: 1   MREVADAYYKAGAEDIKQLAHDFFNSMDLNGDRRVILREYLAFTE-KRGYIRMSNQEWFR 59

Query: 64  KFDEDGNGTLDFDEIVTVHYICASQRIFFCDECRVFLDGVYFTCVQCFNGSGNTYDLCIS 123
           K D+D  G+L F +++T+ YI  S R F C  C  F+ GV+FTCV+CF+ S + + +C+ 
Sbjct: 60  KLDKDRKGSLGFHDVMTLCYIVKSGRPF-CKGCGEFMSGVFFTCVKCFDHSPSCFSVCLQ 118

Query: 124 CYRDKDINH-HKDALFLDNYTLLQSNRKRN 152
           CY   +I H HK+  FLDN+ LL++ R+++
Sbjct: 119 CYESNNIEHEHKE--FLDNFALLEAKRRKS 146



 Score = 95.9 bits (237), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 56/163 (34%), Positives = 91/163 (55%), Gaps = 16/163 (9%)

Query: 1   MEEISETAKAYYANVSE--KQKRLAKDLFNEMDKDGDGKITFDEYEQYIKHKKGYKTIS- 57
           M+E+ + A AY  + SE  K+K   +  F+ M      ++   E+ ++++ +K YK ++ 
Sbjct: 173 MKELRQIATAYCRSTSEDIKEKEKIRKFFSSMHYGNHERVALHEFLEFMR-RKAYKHLTN 231

Query: 58  ---------TPDFFKKFDEDGNGTLDFDEIVTVHYICASQRIFFCDECRVFLDGVYFTCV 108
                    TP+FF+K D+D  G L+F ++ T++YI  S R F C  C  F++G++FTCV
Sbjct: 232 NNLDLEFMNTPEFFRKLDKDKKG-LNFSDVKTLYYIIQSGRPF-CKGCGEFIEGMFFTCV 289

Query: 109 QCFNGSGNTYDLCISCYR-DKDINHHKDALFLDNYTLLQSNRK 150
            CF      + LC+ CY   K I+     LFLDNY LL++ R+
Sbjct: 290 SCFERGSTCFSLCLHCYNAQKFIHSATHHLFLDNYALLEAMRE 332