Jatropha Genome Database

JcCB0005461.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0005461.10 - phase: 0 /pseudo/partial
         (496 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01027931001 assembled CDS                                       659   0.0  

>GSVIVT01027931001 assembled CDS
          Length = 1114

 Score =  659 bits (1699), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 332/489 (67%), Positives = 370/489 (75%), Gaps = 43/489 (8%)

Query: 1   MYWLVARNVVFALPKWRSLTLFLRSPACKYSSFSRSPSLLIAIAGLEFNCMILVIKSRRK 60
           MYWL  +NVV + P++ SL L LRSPACKY+SF RS +LL+                  +
Sbjct: 1   MYWLSTKNVVVSFPRFYSLALLLRSPACKYTSF-RSSTLLL------------------Q 41

Query: 61  DVERVCCLKEQKNLKGNARVTKKSKASNNVLDDKDLSHIIWWKERLQQCRKPSTIQLVKR 120
             E+  CL E++ LKG  R+TK      N LD+KDLSHI+WWKER+Q C+KPST+ LVKR
Sbjct: 42  QFEKSRCLNERRVLKGAGRMTKNVIGLQNELDEKDLSHIMWWKERMQMCKKPSTVHLVKR 101

Query: 121 LMYSNLLGLDVNLKNGSLKEGNLNWEMLQFKSKFPREVLLCRVGDFYEAIGIDACFLVEY 180
           L+YSNLLG+D NLKNG+LKEG LNWEMLQFKSKFPREVLLCRVGDFYEAIGIDAC LVEY
Sbjct: 102 LIYSNLLGVDPNLKNGNLKEGTLNWEMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEY 161

Query: 181 AGLNPFGGLRSDSIPRAGCPVVNLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISG 240
           AGLNPFGGLRSDSIPRAGCPV+NLRQTLDDLTR+GYSVCIVEEVQGPTQARSRK RFISG
Sbjct: 162 AGLNPFGGLRSDSIPRAGCPVMNLRQTLDDLTRSGYSVCIVEEVQGPTQARSRKGRFISG 221

Query: 241 HAHPGSPYVFGLVGVDHDLDFPEPMPVVGISRSARGYCIVSVLEAMKTYSLEDGLTEEAL 300
           HAHPGSPYVFGLVGVDHDLDFPEPMPVVGISRSA+GY I+ VLE MKT+S+EDGLTEEAL
Sbjct: 222 HAHPGSPYVFGLVGVDHDLDFPEPMPVVGISRSAKGYSIILVLETMKTFSVEDGLTEEAL 281

Query: 301 VAKLRTCRYHHLFLHTSLRNNSSGTCRXXXXXXXXXXXXXCSTRHFEWFQGNPVTELLFK 360
           V KLRTC YHHL LHTSLR NSSGTCR             CS RHFEWF+G+PV++LLFK
Sbjct: 282 VTKLRTCHYHHLLLHTSLRRNSSGTCRWGEFGEGGLLWGECSARHFEWFEGDPVSQLLFK 341

Query: 361 VRELYGLENGVAFRNVTVPSENRPHSLHLGTATQIGQFNFTXTVXIEFFMXCQPILXQVF 420
           V+ELYG ++ V FRNVTV SE RP SLHLGTATQIG                 P L +V 
Sbjct: 342 VKELYGFDDQVTFRNVTVSSEKRPRSLHLGTATQIGAIPTE----------GIPCLLKVL 391

Query: 421 HTLRCHTNRRNTLFIEGIASIKLLRYVRDLLLNPPAYEIASTIQAICKLMSNVTCSIPEF 480
               C               + LL YVRDLLLNPPAYEIAS IQA C+LM+NVTCSIPEF
Sbjct: 392 LPSNC-------------TGLPLL-YVRDLLLNPPAYEIASIIQATCRLMNNVTCSIPEF 437

Query: 481 TCVSSAKVV 489
           TCVS AK+V
Sbjct: 438 TCVSPAKLV 446