Jatropha Genome Database

JcCB0005331.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0005331.30 - phase: 0 
         (689 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01019874001 assembled CDS                                       478   e-135
GSVIVT01009585001 assembled CDS                                       303   2e-82
GSVIVT01010653001 assembled CDS                                       271   8e-73
GSVIVT01005083001 assembled CDS                                       251   7e-67
GSVIVT01008549001 assembled CDS                                        94   2e-19
GSVIVT01010490001 assembled CDS                                        86   6e-17

>GSVIVT01019874001 assembled CDS
          Length = 535

 Score =  478 bits (1231), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 237/410 (57%), Positives = 288/410 (70%), Gaps = 28/410 (6%)

Query: 1   MQSPCLKEAAQVCLNGCCPTPLFGYPVSQEKIGQTRSTASTCRRNFAATAASSIFPNTQF 60
           M SPC++E ++ C  GCC   L G+P       +  S+A+  R NFA T  SS+FPNTQF
Sbjct: 1   MHSPCIRETSEACFQGCCLASLPGFPDPHGTDPKNLSSAAVSRYNFALTTVSSLFPNTQF 60

Query: 61  TNPESLPSLQESFAEFTKAYPQYSGTYQVDQIRAQEYYQLSHSHHTCLDYIGIGLFSYSQ 120
           TN ESLP L ESF+ F KAYPQYS T Q DQIRAQEYY LS S+H CLDYIG GLFSYSQ
Sbjct: 61  TNHESLPPLDESFSSFNKAYPQYSNTNQADQIRAQEYYHLSMSNHVCLDYIGHGLFSYSQ 120

Query: 121 LQKHDSRKLVXXXXXXXXXXPQISHFPFFSVSYKTGNLKTQLLHGGQESELESAIKNRIM 180
           LQK                       PFF +SYK+ NL +Q+L+GG+ESELES I+ RIM
Sbjct: 121 LQK----------------------LPFFEISYKSVNLNSQILYGGEESELESKIRKRIM 158

Query: 181 RFLNISEKDYCMVFTANRTSAFKLVAESYPFSSSQKLLTVYDYESEAVETMINCSEKKGA 240
            F+NISE DY MVFTAN++SAFKL+A+ YPF S+Q LLTVYDYE+EAV  MI  S+K+ A
Sbjct: 159 DFMNISEADYSMVFTANQSSAFKLLADFYPFQSNQNLLTVYDYENEAVGAMIRASKKRSA 218

Query: 241 KIMSAEFSWPRLRIHSAXXXXXXXXXXXXXXXXGLFVFPLHSRVTGARYPYLWMSVAQEN 300
           +++SAEFSWP LRIHSA                GLFVFPL SR+TGARY YLWMS+AQEN
Sbjct: 219 RVLSAEFSWPNLRIHSA--KLKKIILNKRKKRRGLFVFPLQSRMTGARYSYLWMSMAQEN 276

Query: 301 DWHILIDACALGPKDMDSFGLSLIRPDFLILSFYKIFGENPSGFGCLFVKKSTVPHMEDS 360
            WH+L+DACALGPKDM++ GLSL RPDFLI SF+K+FG+NPSGFGCLFVKKS+   ++DS
Sbjct: 277 GWHVLLDACALGPKDMETLGLSLFRPDFLICSFFKVFGKNPSGFGCLFVKKSSASILKDS 336

Query: 361 N---STGMIRLIPANKLFWFLDESSGTDVELEQTTKFVLEGDELDTSNSF 407
               S G++ L+PA +   F DES+ TD+E EQT+K  L    LD ++S 
Sbjct: 337 TTAVSVGIVSLLPATRRSQFPDESATTDIETEQTSKLKLHKG-LDHADSL 385



 Score =  219 bits (559), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 105/181 (58%), Positives = 128/181 (70%), Gaps = 23/181 (12%)

Query: 510 RGLDQVDLLGLTQISNRARCLINWLVNALMKLKHPNTEE-IPVIRIYGPKIKFDRGPALA 568
           +GLD  D LGL  IS RAR LINWLVNALM L+HP++E  +P++RIYGP + FDRGPA+A
Sbjct: 377 KGLDHADSLGLILISLRARFLINWLVNALMSLRHPHSENGLPLVRIYGPNVAFDRGPAVA 436

Query: 569 FNVFDWKGEKIEAPLIQKLADRSNISLSCGFLHHISFSDKFEEDKATVLERKASSVKGKL 628
           FNVFDWKGEK+E  L+QKLADRSNISL                        +   V+G L
Sbjct: 437 FNVFDWKGEKVEPTLVQKLADRSNISLKL----------------------RTIGVEGTL 474

Query: 629 TNKREEKSNLGITVATVALGFLANFEDTYRLWAFIAQFLDADFVEKAKWRYTALNQKTIE 688
            NK+ +KS+ GI+V + ALG L NFED Y LWAF+++FLDADFVEK +WRY ALNQKT+E
Sbjct: 475 GNKKRDKSSSGISVVSAALGLLTNFEDVYNLWAFVSRFLDADFVEKERWRYVALNQKTVE 534

Query: 689 V 689
           V
Sbjct: 535 V 535


>GSVIVT01009585001 assembled CDS
          Length = 718

 Score =  303 bits (775), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 198/587 (33%), Positives = 303/587 (51%), Gaps = 85/587 (14%)

Query: 51  ASSIFPNTQFTNPESLPSLQESFAEFTKAYPQYSGTYQVDQIRAQEYYQLSHSH-HTCLD 109
           A+++     F + +S+P+L+++F++F   YP++  T ++DQ+R+ EY  L+  +   CLD
Sbjct: 96  ATALAAERVFCSADSIPNLRDAFSKFLTMYPKFQSTEKIDQLRSDEYEHLAELYAKVCLD 155

Query: 110 YIGIGLFSYSQLQKHDSRKLVXXXXXXXXXXPQISHFPFFSVSYKTGNLKTQLLHGGQE- 168
           + G GLFSY  LQ H + +                    FS+S  T NL    L+GG E 
Sbjct: 156 FCGFGLFSY--LQTHHNWESSA-----------------FSLSEITANLSNHALYGGAEK 196

Query: 169 SELESAIKNRIMRFLNISEKDYCMVFTANRTSAFKLVAESYPFSSSQKLLTVYDYESEAV 228
             +E  IK RIM +LNI E +Y +VFT +R SAFKL+AESYPF ++++LLT++D+ES++V
Sbjct: 197 GTVEHDIKTRIMDYLNIPENEYGLVFTVSRGSAFKLLAESYPFQTNRRLLTMFDHESQSV 256

Query: 229 ETMINCSEKKGAKIMSAEFSWPRLRIHSA--XXXXXXXXXXXXXXXXGLFVFPLHSRVTG 286
             M   +++KGAK+ SA F WP L++ S                   GLFVFP+ SRVTG
Sbjct: 257 NWMAQSAKEKGAKVYSAWFRWPTLKLCSRELRKQISNKKRRKKDSAAGLFVFPVQSRVTG 316

Query: 287 ARYPYLWMSVAQENDWHILIDACALGPKDMDSFGLSLIRPDFLILSFYKI--FGENPSGF 344
           A+Y Y WM++AQ+N+WH+L+DA +LGPKDMDS GLSL RPDF+I SFY++  F +     
Sbjct: 317 AKYSYQWMALAQQNNWHVLLDAGSLGPKDMDSLGLSLFRPDFIITSFYRMPAFSDRDGA- 375

Query: 345 GCLFVKKSTVPHMEDSNSTGMIRLIP-------ANKLFW-------FLDESSGTDVELEQ 390
                  ST+    +S S G +   P       ++  +W       F  ++SG   + + 
Sbjct: 376 -------STIIEEAESISIGEVMKSPIFSEDELSDNSYWIDLGQSPFGSDNSGQLTKQKA 428

Query: 391 TTKFVLEGDELDTSNSFSGPIAIPKM----HHEELEQGXXXXXXXXXXXXXXXVSENSKS 446
            +           +N    P     M    H  EL                  +SE+   
Sbjct: 429 GSPLPPSWFSGRRNNKHLSPKPALNMSKKEHFGELNPAFGTSGKKADSQHNTSMSESC-- 486

Query: 447 ETARTTTEQEVSETATSELQTTGTFTIQKEAETSEIMEPGKPAEVLQQETAKASR----N 502
                   QE  ETA+   + + T    ++   S+ +EPG+ +     +    S     +
Sbjct: 487 --------QETKETASMGRRVSFTMEDNRKESLSQFLEPGEVSLTTLGDDESMSEGDYGD 538

Query: 503 GIM------EIECRGLDQVDLLGLTQISNRARCLINWLVNALMKLKHPNTEEIPVIRIYG 556
           G+       EI CR LD +++LGL + + R R  ++  V              P+++IYG
Sbjct: 539 GLEWGRREPEIICRHLDHINMLGLNKTTLRLRSDLDMGV--------------PLVQIYG 584

Query: 557 PKIKFDRGPALAFNVFDWKGEKIEAPLIQKLADRSNISLSCGFLHHI 603
           PKIK++RG A+AFNV +  G  I   ++Q+LA+++ ISL  GFL HI
Sbjct: 585 PKIKYERGAAVAFNVRNSHGGMIHPEVVQRLAEKNGISLGIGFLSHI 631


>GSVIVT01010653001 assembled CDS
          Length = 224

 Score =  271 bits (693), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 137/195 (70%), Positives = 149/195 (76%), Gaps = 13/195 (6%)

Query: 496 TAKASRNGIMEIECRGLDQVDLLGLTQISNRARCLINWLVNALMKLKHPNTEE-IPVIRI 554
           TAK  R    +IECRGLD VD LGL  IS RAR LINWLVNAL KL HPNTEE  P++RI
Sbjct: 42  TAKHDRPETSKIECRGLDHVDSLGLVLISRRARYLINWLVNALTKLHHPNTEEGSPLVRI 101

Query: 555 YGPKIKFDRGPALAFNVFDWKGEKIEAPLIQKLADRSNISLSCGFLHHISFSDKFEEDKA 614
           YGP IKF+RGPALAFNVFDWKGEK+E  L+QKLADRSNISLS GFLHH+ FSDK      
Sbjct: 102 YGPNIKFERGPALAFNVFDWKGEKVEPILLQKLADRSNISLSYGFLHHLWFSDK------ 155

Query: 615 TVLERKASSVKGKLTNKREEKSNLGITVATVALGFLANFEDTYRLWAFIAQFLDADFVEK 674
                  +  KG   NKR+ K +LGITV T ALGFL NFED YRLWAF+AQFLDADFVEK
Sbjct: 156 ------ETEAKGMAQNKRKGKDDLGITVVTAALGFLTNFEDIYRLWAFVAQFLDADFVEK 209

Query: 675 AKWRYTALNQKTIEV 689
            +WRYTALNQKTIEV
Sbjct: 210 ERWRYTALNQKTIEV 224



 Score = 81.6 bits (200), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 35/40 (87%), Positives = 38/40 (95%)

Query: 316 MDSFGLSLIRPDFLILSFYKIFGENPSGFGCLFVKKSTVP 355
           MD+FGLSL RPDFLI SFYK+FGENP+GFGCLFVKKSTVP
Sbjct: 1   MDTFGLSLFRPDFLICSFYKVFGENPTGFGCLFVKKSTVP 40


>GSVIVT01005083001 assembled CDS
          Length = 801

 Score =  251 bits (642), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 136/315 (43%), Positives = 190/315 (60%), Gaps = 28/315 (8%)

Query: 26  PVSQ-EKIGQTRSTAST-CRRNFAATAASSIFPNTQFTNPESLPSLQESFAEFTKAYPQY 83
           P +Q E +G++RS A    +R F    A+++     F + ES+P L E+F +F   YP+Y
Sbjct: 92  PANQDEGLGRSRSLARLHNQREF--LRATALAAERTFESEESIPDLHEAFTKFLTMYPKY 149

Query: 84  SGTYQVDQIRAQEYYQLSHSHHTCLDYIGIGLFSYSQLQKHDSRKLVXXXXXXXXXXPQI 143
             + ++D +RA EY  L+     CLDY G GLFSY Q   +                   
Sbjct: 150 QSSEKIDHLRADEYGHLAPK--VCLDYCGFGLFSYIQTMHYWESST-------------- 193

Query: 144 SHFPFFSVSYKTGNLKTQLLHGGQE-SELESAIKNRIMRFLNISEKDYCMVFTANRTSAF 202
                F++S  T NL    L+GG E   +E  IK RIM +LNI E +Y +VFT +R SAF
Sbjct: 194 -----FNLSEITANLSNHALYGGAEKGTMEHDIKTRIMDYLNIPENEYGLVFTVSRGSAF 248

Query: 203 KLVAESYPFSSSQKLLTVYDYESEAVETMINCSEKKGAKIMSAEFSWPRLRIHSA--XXX 260
           KL+AESYPF ++++LLT++D+ES++V  M   +++KGAK+ SA F WP L++ S      
Sbjct: 249 KLLAESYPFHTNKRLLTMFDHESQSVSWMAQAAKEKGAKVHSAWFKWPTLKLCSTDLRKR 308

Query: 261 XXXXXXXXXXXXXGLFVFPLHSRVTGARYPYLWMSVAQENDWHILIDACALGPKDMDSFG 320
                        GLFVFP+ SRVTGA+Y Y WM++AQ+N+WH+L+DA +LGPKDMDS G
Sbjct: 309 ISHKKKRKKDSAAGLFVFPVQSRVTGAKYSYQWMALAQQNNWHVLLDAGSLGPKDMDSLG 368

Query: 321 LSLIRPDFLILSFYK 335
           LSL RPDF+I SFY+
Sbjct: 369 LSLFRPDFIITSFYR 383



 Score = 94.7 bits (234), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 45/96 (46%), Positives = 67/96 (69%), Gaps = 3/96 (3%)

Query: 506 EIECRGLDQVDLLGLTQISNRARCLINWLVNALMKLKHPNTE---EIPVIRIYGPKIKFD 562
           EI C+ ++ V+LLGL++ + R R LINWLV +L++L+ P TE    +P++ IYGPKIK++
Sbjct: 655 EIICQHINHVNLLGLSKTTCRLRFLINWLVTSLLQLRLPGTEGGEAVPLVHIYGPKIKYE 714

Query: 563 RGPALAFNVFDWKGEKIEAPLIQKLADRSNISLSCG 598
           RG A+AFN+ D     I   ++QKLA++  ISL  G
Sbjct: 715 RGAAVAFNLRDRNRGLINPEVVQKLAEKEGISLGIG 750


>GSVIVT01008549001 assembled CDS
          Length = 361

 Score = 94.4 bits (233), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 55/178 (30%), Positives = 91/178 (51%), Gaps = 8/178 (4%)

Query: 176 KNRIMRFLNISEKDYCMVFTANRTSAFKLVAESYPFSSSQKLLTVYDYESEAVETMINCS 235
           +N++++   +S+ +Y ++FT+N   A  +V ESYPF      +T+   E + ++     +
Sbjct: 180 QNKVLKHCGLSDNEYLVLFTSNYKEAMMMVGESYPFFRGNFYMTILGEEEDYIKEF---A 236

Query: 236 EKKGAKIMSAEFSWPRLRIHSAXXXXXXXXXXXXXXXXGLFVFPLHSRVTGARYPYLWMS 295
             K +K++SA  +W  LRI  +                GLF +P  + V G RY   W+S
Sbjct: 237 SYKDSKVISAPETWLDLRIKGS-QLSQYFRRKCKHSPKGLFCYP--ADVNGTRYSMHWVS 293

Query: 296 VAQENDWHILIDACALGPKDMDSFGLSLIRPDFLILSFYKIFGENPSGFGCLFVKKST 353
            A  N WH+L+DA AL   + D   L+L RPDF++ S       +PS   CL V++ +
Sbjct: 294 EAHRNSWHVLLDATALVVGE-DRLNLALHRPDFVLCSLDNTHA-HPSRITCLLVRRKS 349


>GSVIVT01010490001 assembled CDS
          Length = 339

 Score = 85.9 bits (211), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 53/175 (30%), Positives = 84/175 (48%), Gaps = 8/175 (4%)

Query: 176 KNRIMRFLNISEKDYCMVFTANRTSAFKLVAESYPFSSSQKLLTVYDYESEAVETMINCS 235
           +NR ++   +SE +Y ++FT N   A  ++ ESYPF      +T+   E + +   +   
Sbjct: 162 RNRALQHCGLSESEYMVLFTPNYKDAMMMIGESYPFFRGNFYMTIIGEERDYIRQFVMA- 220

Query: 236 EKKGAKIMSAEFSWPRLRIHSAXXXXXXXXXXXXXXXXGLFVFPLHSRVTGARYPYLWMS 295
             K +K++SA  +W  LRI  +                GLF +P  + V G RY   W+S
Sbjct: 221 --KDSKVVSAPETWLDLRIKGS-QLSQYFRRKCKNIPKGLFSYP--ANVNGTRYSMHWIS 275

Query: 296 VAQENDWHILIDACALGPKDMDSFGLSLIRPDFLILSFYKIFGENPSGFGCLFVK 350
            A  N WH+L+DA  +     D   L+L RPDF++ +      + PS   CL V+
Sbjct: 276 EAHRNSWHVLLDATEMV-IGKDRLTLALHRPDFVLCTLDDKHTQ-PSMITCLLVR 328