Jatropha Genome Database

JcCB0005331.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0005331.10 - phase: 0 
         (368 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01027588001 assembled CDS                                       249   2e-66
GSVIVT01019876001 assembled CDS                                       216   1e-56
GSVIVT01023283001 assembled CDS                                       131   5e-31
GSVIVT01008023001 assembled CDS                                       125   3e-29
GSVIVT01020011001 assembled CDS                                       125   4e-29
GSVIVT01026145001 assembled CDS                                       119   2e-27

>GSVIVT01027588001 assembled CDS
          Length = 340

 Score =  249 bits (635), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 146/278 (52%), Positives = 169/278 (60%), Gaps = 70/278 (25%)

Query: 94  SKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETIRWLLEHAEPAIIEATGTGT 153
           +KDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETIRWLLEHAEPAII ATGTGT
Sbjct: 119 TKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETIRWLLEHAEPAIIAATGTGT 178

Query: 154 VPAIAVSINGTLKIPTTSPA---RPDGDELLPKKRRKRPSNSDFIDVNEQQTSVSSGLAP 210
           VPAIA+S+ GTLKIPTTS A    PD +    KK+RKRP+NS+F+DVN+   SVSSGLAP
Sbjct: 179 VPAIAMSVGGTLKIPTTSTATTQEPDPN----KKKRKRPANSEFVDVND-AVSVSSGLAP 233

Query: 211 ISPTAAATLPNYGGGSTQGLVPFWPM-----GTF-MLPQS---GSGSNQSQLWAIPAAAT 261
           I+   A           QGLVP W +     G F M+P +      SNQ Q+W  P  AT
Sbjct: 234 IATPLAP----------QGLVPMWAIPSNAVGAFWMVPPTTAIAGPSNQPQIWTFPPTAT 283

Query: 262 PFFNVAARPISSFVSAMQPGVQLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 321
           P  N++ARPISSFVS+M P + +                                     
Sbjct: 284 PLINISARPISSFVSSMHPTINV------------------------------------- 306

Query: 322 XXXXXXXXXXXXXXAQMLRDFSLEIYDKKELQFLGHSA 359
                         + MLRDFSLEIYDK+ELQF+  S+
Sbjct: 307 ------ASATASAASTMLRDFSLEIYDKQELQFMSRSS 338


>GSVIVT01019876001 assembled CDS
          Length = 431

 Score =  216 bits (551), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 123/191 (64%), Positives = 143/191 (74%), Gaps = 18/191 (9%)

Query: 94  SKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETIRWLLEHAEPAIIEATGTGT 153
           +KDRHTKVEGRGRRIR+PATCAARIFQLTRELGHKSDGET+RWLLEHAE AIIEATGTGT
Sbjct: 187 TKDRHTKVEGRGRRIRIPATCAARIFQLTRELGHKSDGETVRWLLEHAEQAIIEATGTGT 246

Query: 154 VPAIAVSINGTLKIPTTSPARPDGDELLPKKRRKRPSNSDFIDVNEQQTSVSSGLAPISP 213
           VPAIAVS+ GTLKIPT+S + P+G+     K+RKRP+NS+F DVN+   SVSSGLAP+  
Sbjct: 247 VPAIAVSVGGTLKIPTSSSSNPEGEA---PKKRKRPANSEFYDVND-GVSVSSGLAPVGA 302

Query: 214 TAAATLPNYGGGSTQGLVPFWPMGT--FMLPQSGSGSNQSQLWAIPAAATPFFNVAARPI 271
           TA A        + QGLVP W +G    M+P      N  QLW I  + +P FN++ARPI
Sbjct: 303 TAVAAA------APQGLVPIWAVGNAGMMIP-----PNAPQLWTISPSVSPVFNMSARPI 351

Query: 272 SSFVSAMQPGV 282
           SSF S M P V
Sbjct: 352 SSF-STMAPCV 361



 Score = 55.5 bits (132), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 25/31 (80%), Positives = 27/31 (87%)

Query: 337 QMLRDFSLEIYDKKELQFLGHSAAQQSPSSK 367
           QMLRDFSLEIYDKKELQF+G S  QQ+ SSK
Sbjct: 376 QMLRDFSLEIYDKKELQFMGRSGNQQTQSSK 406


>GSVIVT01023283001 assembled CDS
          Length = 387

 Score =  131 bits (329), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 60/77 (77%), Positives = 69/77 (89%)

Query: 90  AKRPSKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETIRWLLEHAEPAIIEAT 149
           AKR +KDRHTKV+GRGRRIRMPATCAAR+FQLTRELGHKSDGETI WLL+ AEPAII AT
Sbjct: 110 AKRSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAAT 169

Query: 150 GTGTVPAIAVSINGTLK 166
           GTGT+PA   ++N +L+
Sbjct: 170 GTGTIPANFSTLNVSLR 186


>GSVIVT01008023001 assembled CDS
          Length = 345

 Score =  125 bits (314), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 69/125 (55%), Positives = 80/125 (64%), Gaps = 20/125 (16%)

Query: 48  KEEEFTDSDGHELGDXXXXXXXSLPISLLQVPKSSNTRALVTAKRPSK----------DR 97
           KEEE   S G+           SL IS  +   + +  +L  A  PSK          DR
Sbjct: 30  KEEEACSSSGY----------PSLAISSAEPNTNRSNSSLQIAAEPSKKPPPKRTSTKDR 79

Query: 98  HTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETIRWLLEHAEPAIIEATGTGTVPAI 157
           HTKV+GRGRRIRMPA CAAR+FQLTRELGHKSDGETI WLL+ AEPA+I ATGTGT+PA 
Sbjct: 80  HTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPAN 139

Query: 158 AVSIN 162
             S+N
Sbjct: 140 FTSLN 144


>GSVIVT01020011001 assembled CDS
          Length = 317

 Score =  125 bits (313), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 56/69 (81%), Positives = 63/69 (91%)

Query: 94  SKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETIRWLLEHAEPAIIEATGTGT 153
           +KDRHTKV+GRGRRIRMPATCAAR+FQLTRELGHKSDGETI WLL+ AEPA+I ATGTGT
Sbjct: 49  TKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGT 108

Query: 154 VPAIAVSIN 162
           +PA   S+N
Sbjct: 109 IPANFTSLN 117


>GSVIVT01026145001 assembled CDS
          Length = 288

 Score =  119 bits (298), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 55/77 (71%), Positives = 63/77 (81%)

Query: 86  ALVTAKRPSKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETIRWLLEHAEPAI 145
           AL   K P+KDRH+KV+GRGRRIRMP  CAAR+FQLTRELGHKSDG+TI WLL  AEP+I
Sbjct: 99  ALAVKKPPAKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSI 158

Query: 146 IEATGTGTVPAIAVSIN 162
           I ATGTGT PA   S++
Sbjct: 159 IAATGTGTTPASFSSVS 175