Jatropha Genome Database
- JcCB0005311.20
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0005311.20 - phase: 0 /partial
(261 letters)
Database: grape_pep_20100319
26,346 sequences; 9,959,944 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
GSVIVT01033734001 assembled CDS 390 e-109
GSVIVT01034942001 assembled CDS 178 2e-45
GSVIVT01014698001 assembled CDS 120 5e-28
GSVIVT01009206001 assembled CDS 120 8e-28
GSVIVT01003328001 assembled CDS 81 5e-16
GSVIVT01025537001 assembled CDS 74 6e-14
GSVIVT01017633001 assembled CDS 70 8e-13
GSVIVT01024033001 assembled CDS 68 4e-12
GSVIVT01018731001 assembled CDS 67 1e-11
>GSVIVT01033734001 assembled CDS
Length = 1161
Score = 390 bits (1003), Expect = e-109, Method: Compositional matrix adjust.
Identities = 190/261 (72%), Positives = 205/261 (78%), Gaps = 41/261 (15%)
Query: 1 HYDGDFKDLSLDFTVTEESFGKRHVFELKPGGKDVCVTNENKMQYVHAMADYKLNRQILP 60
HYDGD K+LSLDFTVTEES GKRH+ ELKPGGKD VTNENK+QYVHAMADYKLNRQ+LP
Sbjct: 942 HYDGDVKELSLDFTVTEESLGKRHIIELKPGGKDAIVTNENKLQYVHAMADYKLNRQMLP 1001
Query: 61 FSNAFYRGLTDVISPSWLKLFNAMEFNQLLSGGDFDIDVDDLRNNTRYTGGYSEGSRTIK 120
SNAFYRGLTD+ISPSWLKLFNA EFNQLLSGG+ DID+ DLRN+TRYTGGY+EGSRT+K
Sbjct: 1002 LSNAFYRGLTDLISPSWLKLFNASEFNQLLSGGNHDIDITDLRNHTRYTGGYTEGSRTVK 1061
Query: 121 LFWEVIRGFQPNERCLLLKFVTSCSRAPLLGFKHLQPSFTIHKVACDASLWATIGGQDVD 180
LFWEVI GF+P ERC+LLKFVTSCSRAPLLGFKHLQP+FTIHKVACD LWATIGGQDV+
Sbjct: 1062 LFWEVITGFEPKERCMLLKFVTSCSRAPLLGFKHLQPTFTIHKVACDVPLWATIGGQDVE 1121
Query: 181 RLPSASTCYNTLKVFLMQGTMTPRIFSLRFQSILFIFHLTLDVPVLYSCLGWLQLPTYKR 240
RLPSASTCYNTLK LPTYKR
Sbjct: 1122 RLPSASTCYNTLK-----------------------------------------LPTYKR 1140
Query: 241 ASTLRAKLLYAISSNTGFELS 261
STLRAKLLYAI+SN GFELS
Sbjct: 1141 PSTLRAKLLYAINSNAGFELS 1161
>GSVIVT01034942001 assembled CDS
Length = 1034
Score = 178 bits (452), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 97/261 (37%), Positives = 138/261 (52%), Gaps = 47/261 (18%)
Query: 1 HYDGDFKDLSLDFTVTEESFGKRHVFELKPGGKDVCVTNENKMQYVHAMADYKLNRQILP 60
H++GD +L L F + +G++ EL PGGK++ VTNEN + ++H +A+++LN QI
Sbjct: 821 HFEGDLSELELYFVIVNNEYGEQTEEELLPGGKNIRVTNENVITFIHLIANHRLNFQIRQ 880
Query: 61 FSNAFYRGLTDVISPSWLKLFNAMEFNQLLSGGDFDIDVDDLRNNTRYTGGYSEGSRTIK 120
S F RG +I W+++F+ E L+SG +DVDDLR+NT Y GGY I+
Sbjct: 881 QSTHFLRGFQQLIQRDWIEMFDEHELQLLISGSLDGLDVDDLRSNTNYAGGYHSEHYVIE 940
Query: 121 LFWEVIRGFQPNERCLLLKFVTSCSRAPLLGFKHLQPSFTIHKVACDASLWATIGGQDVD 180
FWEV++ F + LKFVT CSR PLLGFK+L+P F I + A AS A +D
Sbjct: 941 TFWEVLKSFTLENQMKFLKFVTGCSRGPLLGFKYLEPLFCIQRAAGSASEEA------LD 994
Query: 181 RLPSASTCYNTLKVFLMQGTMTPRIFSLRFQSILFIFHLTLDVPVLYSCLGWLQLPTYKR 240
RLP+++TC N LK LP Y+
Sbjct: 995 RLPTSATCMNLLK-----------------------------------------LPPYRS 1013
Query: 241 ASTLRAKLLYAISSNTGFELS 261
+ KLLYAI+++ GF+LS
Sbjct: 1014 KEQMATKLLYAINADAGFDLS 1034
>GSVIVT01014698001 assembled CDS
Length = 1478
Score = 120 bits (302), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 67/174 (38%), Positives = 97/174 (55%), Gaps = 18/174 (10%)
Query: 26 FELKPGGKDVCVTNENKMQYVHAMADYKLNRQILPFSNAFYRGLTDVISPSWLKLFNAME 85
+ELKPGG+++ VT E K +Y+ +A++ L I P N+F G +++ + +FN E
Sbjct: 1291 YELKPGGRNIRVTEETKHEYIDLVAEHILTNAIRPQINSFLEGFNELVPRELISIFNDKE 1350
Query: 86 FNQLLSGGDFDIDVDDLRNNTRYTGGYSEGSRTIKLFWEVIRGFQPNERCLLLKFVTSCS 145
L+SG +ID+DDL+ NT YT GY+ S ++ FWEV++ F + LL+FVT S
Sbjct: 1351 LELLISGLP-EIDLDDLKANTEYT-GYTAASSVVQWFWEVVKAFNKEDMARLLQFVTGTS 1408
Query: 146 RAPLLGFKHLQ-----PSFTIHKVACDASLWATIGGQDVDRLPSASTCYNTLKV 194
+ PL GFK LQ F IHK +RLPSA TC+N L +
Sbjct: 1409 KVPLDGFKALQGISGPQKFQIHKAYGAP-----------ERLPSAHTCFNQLDL 1451
>GSVIVT01009206001 assembled CDS
Length = 1824
Score = 120 bits (300), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 69/171 (40%), Positives = 94/171 (54%), Gaps = 18/171 (10%)
Query: 27 ELKPGGKDVCVTNENKMQYVHAMADYKLNRQILPFSNAFYRGLTDVISPSWLKLFNAMEF 86
EL PGG+++ VT +NK +YV +A+++L I P NAF G ++I + +FN E
Sbjct: 1638 ELIPGGRNIRVTEDNKHKYVDLVAEHRLTTAIRPQINAFLEGFNELIPRDLISIFNDKEL 1697
Query: 87 NQLLSGGDFDIDVDDLRNNTRYTGGYSEGSRTIKLFWEVIRGFQPNERCLLLKFVTSCSR 146
L+SG DID+DD+R NT Y+ GYS S I+ FWEV++ ++ LL+FVT S+
Sbjct: 1698 ELLISGLP-DIDLDDMRANTEYS-GYSPASPVIQWFWEVVQSLSKEDKARLLQFVTGTSK 1755
Query: 147 APLLGFKHLQ-----PSFTIHKVACDASLWATIGGQDVDRLPSASTCYNTL 192
PL GF LQ F IHK D LPSA TC+N L
Sbjct: 1756 VPLEGFSALQGISGSQKFQIHKAYGSP-----------DHLPSAHTCFNQL 1795
>GSVIVT01003328001 assembled CDS
Length = 831
Score = 80.9 bits (198), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 61/198 (30%), Positives = 89/198 (44%), Gaps = 20/198 (10%)
Query: 3 DGDFKD---LSLDFTVTEESFGKRHVFELKPGGKDVCVTNENKMQYVHAMADYKLNRQIL 59
D +F D L L F E G R V EL PGGK++ V ++N+ +YV+ + ++
Sbjct: 616 DAEFMDSDALGLTFVREIEELGSRRVVELCPGGKNIIVNSKNRDEYVYLLIRHRFVTSTS 675
Query: 60 PFSNAFYRGLTDVISPSWLK--LFNAMEFNQL---LSGGDFDIDVDDLRNNTRYTGGYSE 114
F G D++ L+ F ++E L L G + I VDD + +T Y GY E
Sbjct: 676 EQVAQFAGGFADILCNQKLQKFFFQSLELEDLDWMLYGSESAICVDDWKAHTEY-NGYKE 734
Query: 115 GSRTIKLFWEVIRGFQPNERCLLLKFVTSCSRAPLLGFKHLQPSFTIHKVACDASLWATI 174
I FW++I +R +LL F TS P+ GF L I+K
Sbjct: 735 TDPQIFWFWKIIGEMSAEQRKILLFFWTSVKYLPVEGFGGLASRLYIYK----------- 783
Query: 175 GGQDVDRLPSASTCYNTL 192
+ RLPS+ TC+ L
Sbjct: 784 SSEPCVRLPSSHTCFYRL 801
>GSVIVT01025537001 assembled CDS
Length = 1487
Score = 74.3 bits (181), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 71/257 (27%), Positives = 97/257 (37%), Gaps = 55/257 (21%)
Query: 6 FKDLSLDFTVTEESFGKRHVFELKPGGKDVCVTNENKMQYVHAMADYKLNRQILPFSNAF 65
+DL LDFT+ + L G VT N +YV + D +N I AF
Sbjct: 1285 IEDLYLDFTLP-----GYPEYVLTSGSDHKMVTMTNLEEYVSLLVDTTINAGISRQVEAF 1339
Query: 66 YRGLTDVISPSWLKLFNAMEFNQLLSGGDFDIDVDDLRNNTRYTGGYSEGSRTIKLFWEV 125
G V L++F E +LL G + L ++ ++ GY+ S I E+
Sbjct: 1340 RSGFNQVFPIKHLQIFTEEELEKLLCGERDSWACNGLLDHIKFDHGYTASSPPIINLLEI 1399
Query: 126 IRGFQPNERCLLLKFVTSCSRAPLLGFKHLQPSFTIHKVACDASLWATIGGQDVDRLPSA 185
++ F +R L+FVT R P G L P TI + C S WA D D LPS
Sbjct: 1400 VQEFDHEQRRAFLQFVTGAPRLPPGGLASLNPKLTIVRKHC--SKWA-----DAD-LPSV 1451
Query: 186 STCYNTLKVFLMQGTMTPRIFSLRFQSILFIFHLTLDVPVLYSCLGWLQLPTYKRASTLR 245
TC N +L+LP Y ++
Sbjct: 1452 MTCAN-----------------------------------------YLKLPPYSSKERMK 1470
Query: 246 AKLLYAISSNTG-FELS 261
KLLYAI+ G F LS
Sbjct: 1471 EKLLYAITEGQGSFHLS 1487
>GSVIVT01017633001 assembled CDS
Length = 369
Score = 70.5 bits (171), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 54/95 (56%)
Query: 1 HYDGDFKDLSLDFTVTEESFGKRHVFELKPGGKDVCVTNENKMQYVHAMADYKLNRQILP 60
H++GD +L L F + +G++ L PGGK++ VTNEN + ++H +A+++LN QI
Sbjct: 16 HFEGDLSELELYFVIVNNEYGEQTEEGLLPGGKNIRVTNENVITFIHLIANHRLNFQIRQ 75
Query: 61 FSNAFYRGLTDVISPSWLKLFNAMEFNQLLSGGDF 95
S+ F G +I W+++F+ E L D
Sbjct: 76 QSSHFLMGFQQLIQRDWIEMFDEHELQVLYIHADL 110
>GSVIVT01024033001 assembled CDS
Length = 1352
Score = 68.2 bits (165), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 66/263 (25%), Positives = 102/263 (38%), Gaps = 55/263 (20%)
Query: 6 FKDLSLDFTVTEESFGKRHVFELKPGGKDVCVTNENKMQYVHAMADYKLNRQILPFSNAF 65
+DL LDFT+ + LKPG ++V + N +Y+ + D + I+ AF
Sbjct: 1138 IEDLCLDFTLP-----GYPDYILKPGEENVDINNLE--EYISLVVDATVKTGIMRQMEAF 1190
Query: 66 YRGLTDVISPSWLKLFNAMEFNQLLSGGDFDIDVDDLRNNTRYTGGYSEGSRTIKLFWEV 125
G V + L++F+ E + LL G + + L ++ ++ GY+ S I E+
Sbjct: 1191 RSGFNQVFDITSLQIFSPDELDYLLCGRRELWEAETLVDHIKFDHGYTAKSPAIINLLEI 1250
Query: 126 IRGFQPNERCLLLKFVTSCSRAPLLGFKHLQPSFTIHKVACDASLWATIGGQDV------ 179
+ F P ++ +FVT R P G L P TI + +++ G
Sbjct: 1251 MGEFNPEQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSSTVSTAANGSSGPSESAD 1310
Query: 180 DRLPSASTCYNTLKVFLMQGTMTPRIFSLRFQSILFIFHLTLDVPVLYSCLGWLQLPTYK 239
D LPS TC N +L+LP Y
Sbjct: 1311 DDLPSVMTCAN-----------------------------------------YLKLPPYS 1329
Query: 240 RASTLRAKLLYAISSNTG-FELS 261
+ KLLYAIS G F+LS
Sbjct: 1330 TKEIMYKKLLYAISEGQGSFDLS 1352
>GSVIVT01018731001 assembled CDS
Length = 1516
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 88/192 (45%), Gaps = 9/192 (4%)
Query: 7 KDLSLDFTVTEESFGKRHVFELKPGGKDVCVTNENKMQYVHAMADYKLNRQILPFSNAFY 66
+DL LDFT+ + LK G ++V V ++N +YV + D + ++ AF
Sbjct: 1303 EDLCLDFTLP-----GYPDYILKSGYENVLVDSDNLDEYVSLVVDATVKSGLMHQMEAFR 1357
Query: 67 RGLTDVISPSWLKLFNAMEFNQLLSGGDFDIDVDDLRNNTRYTGGYSEGSRTIKLFWEVI 126
G V S L++F+ E + LL G ++ L ++ ++ GY+ S I E++
Sbjct: 1358 AGFNQVFDISSLQIFSPHELDYLLCGRRELWKMETLVDHIKFDHGYTAKSPAIINLLEIM 1417
Query: 127 RGFQPNERCLLLKFVTSCSRAPLLGFKHLQPSFTIHKVACDASLWAT--IGGQDV--DRL 182
F P ++ +F+T R P G L P TI + AT IG + + L
Sbjct: 1418 GEFTPEQQHAFCQFITGAPRLPPGGLAMLNPKLTIVRKHSSTMNPATNMIGPSESADEDL 1477
Query: 183 PSASTCYNTLKV 194
PS TC N LK+
Sbjct: 1478 PSVMTCANYLKL 1489