Jatropha Genome Database

JcCB0004891.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0004891.30 + phase: 0 /partial
         (161 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01009165001 assembled CDS                                       173   3e-44
GSVIVT01015633001 assembled CDS                                       164   1e-41
GSVIVT01013736001 assembled CDS                                        95   2e-20
GSVIVT01032466001 assembled CDS                                        92   1e-19
GSVIVT01007742001 assembled CDS                                        86   5e-18
GSVIVT01007745001 assembled CDS                                        86   6e-18
GSVIVT01032226001 assembled CDS                                        85   1e-17

>GSVIVT01009165001 assembled CDS
          Length = 328

 Score =  173 bits (438), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 89/148 (60%), Positives = 110/148 (74%), Gaps = 4/148 (2%)

Query: 1   EKLAKVNDVRLGFPSSHKENPILRVDASISSLGLVQEDRSVQVQN----VPKSGGRQNSF 56
           +KL +V +  LG   S K N + R++AS  SLG  Q   S ++ N    + K+    + F
Sbjct: 51  KKLVRVGETHLGSLPSVKRNLVSRLEASSDSLGCGQHLMSNKMGNEMESLDKTDQGLDFF 110

Query: 57  DEMKQRFLNFKQYKYLKEAEHFKNLAELQSPKFMVIACVDSRVCPSNILGFQPGEAFTVR 116
           +E+K RFL FK+ KYL+E EHF+ LA+ QSPKFMVIAC DSRVCPSNILGFQPGEAF +R
Sbjct: 111 EELKHRFLCFKKQKYLEEPEHFQALAKAQSPKFMVIACADSRVCPSNILGFQPGEAFMIR 170

Query: 117 NVANIVPPLENGPTETNAALEFAVNTLE 144
           NVAN+VPP+ENGP+ETNAALEFAVNTLE
Sbjct: 171 NVANLVPPVENGPSETNAALEFAVNTLE 198


>GSVIVT01015633001 assembled CDS
          Length = 301

 Score =  164 bits (415), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 80/122 (65%), Positives = 97/122 (79%)

Query: 23  LRVDASISSLGLVQEDRSVQVQNVPKSGGRQNSFDEMKQRFLNFKQYKYLKEAEHFKNLA 82
           LR+ AS  S GL QE  S +++++ +   R + FDE+K RFL+FK++KYL+  E F+NLA
Sbjct: 56  LRLKASRESPGLTQELTSDRLESIAEIENRYDVFDEVKHRFLSFKKHKYLENLECFQNLA 115

Query: 83  ELQSPKFMVIACVDSRVCPSNILGFQPGEAFTVRNVANIVPPLENGPTETNAALEFAVNT 142
             Q+PKFMVIAC DSRVCPS ILGF+PGEAF VRNVAN+VP  ENGPTETNAALEFAVNT
Sbjct: 116 TAQAPKFMVIACADSRVCPSKILGFEPGEAFMVRNVANLVPLYENGPTETNAALEFAVNT 175

Query: 143 LE 144
           LE
Sbjct: 176 LE 177


>GSVIVT01013736001 assembled CDS
          Length = 256

 Score = 94.7 bits (234), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 47/88 (53%), Positives = 60/88 (68%), Gaps = 1/88 (1%)

Query: 54  NSFDEMKQRFLNFKQYKYLKEAEHFKNLAELQSPKFMVIACVDSRVCPSNILGFQPGEAF 113
           ++ + +K  F  FK  KY K    +  LA+ QSPKFMV AC DSRVCPS+IL FQPGEAF
Sbjct: 47  DAVERIKTGFGRFKTEKYEKNPTLYDELAKGQSPKFMVFACSDSRVCPSHILDFQPGEAF 106

Query: 114 TVRNVANIVPPLENGP-TETNAALEFAV 140
            VRN+AN+VPP +    +   AA+E+AV
Sbjct: 107 MVRNIANMVPPYDQTKYSGVGAAIEYAV 134


>GSVIVT01032466001 assembled CDS
          Length = 335

 Score = 91.7 bits (226), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 55/128 (42%), Positives = 79/128 (61%), Gaps = 8/128 (6%)

Query: 22  ILRVDASISSLGLVQEDR-SVQVQNVPKSGGRQNSFD---EMKQRFLNFKQYKYLKEAEH 77
           +LR  A++  +   + D+ + Q+++   S G  + FD    MK  F+ FK+ KY K    
Sbjct: 82  LLREKANLEPVAAAKIDQITAQLKS---SDGSSSPFDPVERMKTGFIYFKKEKYDKNPAL 138

Query: 78  FKNLAELQSPKFMVIACVDSRVCPSNILGFQPGEAFTVRNVANIVPPLEN-GPTETNAAL 136
              LA+ QSPKFMV AC DSRVCPS++L FQPG+AF VRNVAN+VP  +    +   +A+
Sbjct: 139 HAELAKGQSPKFMVFACSDSRVCPSHVLDFQPGDAFVVRNVANMVPAYDKIRYSGVGSAV 198

Query: 137 EFAVNTLE 144
           E+AV  L+
Sbjct: 199 EYAVLHLK 206


>GSVIVT01007742001 assembled CDS
          Length = 261

 Score = 86.3 bits (212), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 41/89 (46%), Positives = 59/89 (66%), Gaps = 1/89 (1%)

Query: 57  DEMKQRFLNFKQYKYLKEAEHFKNLAELQSPKFMVIACVDSRVCPSNILGFQPGEAFTVR 116
           + +K  F++FK + + K  +++K LAE Q PKF+V AC DSRV PS++L F+PGEAF  R
Sbjct: 55  ERIKDGFIHFKIHHFDKYPDYYKQLAEGQHPKFLVFACSDSRVSPSHVLNFKPGEAFMCR 114

Query: 117 NVANIVPPLEN-GPTETNAALEFAVNTLE 144
           N+AN+VP       +   A +E+AV  LE
Sbjct: 115 NIANLVPAFNQLRYSGVGAVIEYAVKHLE 143


>GSVIVT01007745001 assembled CDS
          Length = 259

 Score = 86.3 bits (212), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 41/87 (47%), Positives = 58/87 (66%), Gaps = 1/87 (1%)

Query: 59  MKQRFLNFKQYKYLKEAEHFKNLAELQSPKFMVIACVDSRVCPSNILGFQPGEAFTVRNV 118
           +K  F++FK + + K  +++K LAE Q PKF+V AC DSRV PS++L F+PGEAF  RN+
Sbjct: 55  IKDGFIHFKIHHFDKYPDYYKQLAEGQHPKFLVFACSDSRVSPSHVLNFKPGEAFMCRNI 114

Query: 119 ANIVPPLEN-GPTETNAALEFAVNTLE 144
           AN+VP       +   A +E+AV  LE
Sbjct: 115 ANMVPAFNQLRYSGVGAVIEYAVKHLE 141


>GSVIVT01032226001 assembled CDS
          Length = 377

 Score = 85.1 bits (209), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 42/87 (48%), Positives = 58/87 (66%), Gaps = 1/87 (1%)

Query: 59  MKQRFLNFKQYKYLKEAEHFKNLAELQSPKFMVIACVDSRVCPSNILGFQPGEAFTVRNV 118
           +K  F++FK + + K  +++K LAE Q PKF+V AC DSRV PS++L F+PG+AFT RNV
Sbjct: 240 IKDGFIHFKIHYFGKYLDYYKQLAEGQHPKFLVFACSDSRVSPSHVLNFRPGKAFTCRNV 299

Query: 119 ANIVPPLEN-GPTETNAALEFAVNTLE 144
           AN VP       +   A +E+AV  LE
Sbjct: 300 ANSVPAFNQLRYSGVGAVIEYAVKYLE 326