Jatropha Genome Database

JcCB0004891.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0004891.20 + phase: 0 
         (244 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01009166001 assembled CDS                                       172   1e-43
GSVIVT01025747001 assembled CDS                                        89   2e-18
GSVIVT01011960001 assembled CDS                                        88   3e-18
GSVIVT01020688001 assembled CDS                                        86   2e-17
GSVIVT01032789001 assembled CDS                                        82   3e-16

>GSVIVT01009166001 assembled CDS
          Length = 208

 Score =  172 bits (436), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 101/197 (51%), Positives = 119/197 (60%), Gaps = 6/197 (3%)

Query: 39  SSSRLEKKSTEACKSHKEAERRRRQRINAHXXXXXXXXXXXXXXDKASLLAEVVHHVKEL 98
           S +R+E KST AC SH EAERRRRQRINAH              DKASLLAEVV HV EL
Sbjct: 10  SGTRVEGKSTAACNSHSEAERRRRQRINAHLSTLRTLLPNTTKTDKASLLAEVVRHVTEL 69

Query: 99  RKQAAHVARQDRDSCCGSESESEKYWPFPGESDETILSYCDGETKTMRVSVCCEDRPGLN 158
           RK+AA VA Q+ D C        + W FPGE+DE  L Y +G+ + ++ ++CCEDRP LN
Sbjct: 70  RKRAADVAGQNGDGC--CSGGGSESWTFPGETDEVTLGYYEGDERLIKATLCCEDRPSLN 127

Query: 159 RDLSQAIRSVKARAVKAEMMTVGGRTRXXXXXXXXXXXXXXXXXXXXXXRRALKAVVENR 218
           RDL+QAI SV+AR V+AEM TVGGRT+                      RRALKAVVENR
Sbjct: 128 RDLTQAIGSVRARVVRAEMATVGGRTK----SVVVMQWGGGGEAELGNLRRALKAVVENR 183

Query: 219 VSRSGLGQVVQRNKRLR 235
            S  G   V   +KR R
Sbjct: 184 ASGFGSTGVFPLHKRPR 200


>GSVIVT01025747001 assembled CDS
          Length = 239

 Score = 88.6 bits (218), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 52/146 (35%), Positives = 80/146 (54%), Gaps = 19/146 (13%)

Query: 44  EKKSTEACKSHKEAERRRRQRINAHXXXXXXXXXXXXXXDKASLLAEVVHHVKELRKQAA 103
           + ++  A  +HKEAE+RRR+RIN+H              DKASLLA+V+  VKEL++Q +
Sbjct: 59  QSRALTASINHKEAEKRRRERINSHLDKLRSLLPCSSKTDKASLLAKVIQRVKELKEQTS 118

Query: 104 HVARQDRDSCCGSESESEKYWPFPGESDE--TILS--YCDGETKTMRVSVCCEDRPGLNR 159
            + + +                 P E+DE   ILS  Y D      + S+CCEDR  L  
Sbjct: 119 EITQLET---------------LPSETDEINVILSGDYSDDGKSIFKASLCCEDRTELLP 163

Query: 160 DLSQAIRSVKARAVKAEMMTVGGRTR 185
           +L + ++S++ + +KAEM ++GGR R
Sbjct: 164 ELIEILKSLRLKTLKAEMASLGGRIR 189


>GSVIVT01011960001 assembled CDS
          Length = 316

 Score = 88.2 bits (217), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 56/144 (38%), Positives = 80/144 (55%), Gaps = 16/144 (11%)

Query: 43  LEKKSTEACKSHKEAERRRRQRINAHXXXXXXXXXXXXXXDKASLLAEVVHHVKELRKQA 102
           ++ K+  A KSH EAERRRR+RIN H              DKASLLAEV+ HVKEL++Q 
Sbjct: 119 MDAKALAASKSHSEAERRRRERINNHLAKLRSLLPSTTKTDKASLLAEVIQHVKELKRQT 178

Query: 103 AHVARQDRDSCCGSESESEKYWPFPGESDETILSYCDGETK-TMRVSVCCEDRPGLNRDL 161
           + +A                  P P E DE  +   D + K  ++ S+CCEDR  L  DL
Sbjct: 179 SLIAESS---------------PVPTEMDELTVDTSDEDGKFVIKASLCCEDRTDLLPDL 223

Query: 162 SQAIRSVKARAVKAEMMTVGGRTR 185
            + +++++ R +KAE+ T+GGR +
Sbjct: 224 IKTLKALRLRTLKAEITTLGGRVK 247


>GSVIVT01020688001 assembled CDS
          Length = 208

 Score = 85.5 bits (210), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 51/140 (36%), Positives = 76/140 (54%), Gaps = 19/140 (13%)

Query: 50  ACKSHKEAERRRRQRINAHXXXXXXXXXXXXXXDKASLLAEVVHHVKELRKQAAHVARQD 109
           A K+H EAERRRR RINAH              DKASLL EVV H+KEL++ AA ++   
Sbjct: 3   ALKNHSEAERRRRGRINAHLATLRGIIPGTKKMDKASLLGEVVSHLKELKRSAAEIS--- 59

Query: 110 RDSCCGSESESEKYWPFPGESDETILSYCDG----ETKTMRVSVCCEDRPGLNRDLSQAI 165
                       K +  P + DE  +   +G       +++ S+CC+ +PG+  DL +A+
Sbjct: 60  ------------KGFLVPMDIDEVRVEQQEGGLDEAPYSIKASLCCDYKPGVLSDLRRAL 107

Query: 166 RSVKARAVKAEMMTVGGRTR 185
            +V  + V+AE+ T+GGR +
Sbjct: 108 DTVHLKTVRAEIATLGGRMK 127


>GSVIVT01032789001 assembled CDS
          Length = 297

 Score = 81.6 bits (200), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 50/162 (30%), Positives = 81/162 (50%), Gaps = 29/162 (17%)

Query: 37  LSSSSRLEKKSTEACKSHKEAERRRRQRINAHXXXXXXXXXXXXXXDKASLLAEVVHHVK 96
           +++  R ++++  A KSH +AE+RRR RINA               DKA+LL  V+ HVK
Sbjct: 96  MATEDRSDERTATASKSHSQAEKRRRDRINAQLATLRKLIPKSEKMDKAALLGSVIDHVK 155

Query: 97  ELRKQAAHVARQDRDSCCGSESESEKYWPFPGESDETILSYCD-------------GETK 143
           +L++QA  V+                 +  P E DE  +  C+              E  
Sbjct: 156 DLKRQAMEVS---------------DVFTVPTEVDEVTVD-CEFDQGLVPNNTIKTPENI 199

Query: 144 TMRVSVCCEDRPGLNRDLSQAIRSVKARAVKAEMMTVGGRTR 185
            ++ SVCCEDRP L  +L +A++ +K   ++A+M ++ GRT+
Sbjct: 200 FIKASVCCEDRPELFSELIRALQGLKLTTIRADMASLSGRTK 241