Jatropha Genome Database

JcCB0004891.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0004891.10 + phase: 0 
         (215 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01009167001 assembled CDS                                       146   7e-36
GSVIVT01033695001 assembled CDS                                        56   1e-08

>GSVIVT01009167001 assembled CDS
          Length = 378

 Score =  146 bits (369), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 93/219 (42%), Positives = 124/219 (56%), Gaps = 33/219 (15%)

Query: 1   MEGKSCTSSKNHNSGDAEESNAIMQLEGEPMLGDITWVKLHGDSWWPAVVFG------SN 54
           M+GK   SSK+H   + EE  A  QL G+ + GD+ WV+L G SWWPA V        SN
Sbjct: 1   MKGKRLASSKSHVVKE-EEEKAADQLRGKVLPGDLIWVRLRGLSWWPAQVVNENAVSRSN 59

Query: 55  VSGDREIKGVRVRLIGSYEYMYVDPIKCRSEFHITLEKNNGSYEEIFRKALEQDISQSNS 114
             G+R    V VR+ G+Y Y+YVDP+KCRSEF   L++NN SY EIF+KALEQD+  +  
Sbjct: 60  KPGNRSEDEVLVRVYGTYNYLYVDPMKCRSEFENILKQNNCSYREIFQKALEQDLPSAKC 119

Query: 115 SRVKGKVTKSKE-------------GE-------------KAISKASKQDGVKRKLKLDS 148
            R KG+ +KSKE             GE             +A  K SKQ+GV+++ K  S
Sbjct: 120 GRSKGRGSKSKESAEEVESKTFKENGELKKLKLKRPSAKWEAKCKTSKQNGVQKEPKPTS 179

Query: 149 LNPEKNTKRKTSNRDGMQKKLKQKSSSTDAASPGRSQEL 187
           L+ E +TK +TS   G+QKK    S STDA    +S+ +
Sbjct: 180 LSNEDDTKCRTSQHSGVQKKHNPNSLSTDAKKEAKSKTV 218



 Score = 72.8 bits (177), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 44/90 (48%), Positives = 57/90 (63%), Gaps = 9/90 (10%)

Query: 128 EKAISKASKQDGVKRKLKLDSLNPEKNTKRKTSNRDGMQKKLKQKSSSTDAASPGRSQE- 186
           E + SK  KQDG ++KLKL+S + EK  KRKTS +D M KKL   S  T  +S  ++ E 
Sbjct: 283 EASESKTLKQDGAQKKLKLNSPSTEKEAKRKTSKKDDMLKKLNSNSPCTATSSTRKTSEK 342

Query: 187 --------LSARRTKVMQTLGLIAPSGSPF 208
                   L+ARR +VM++LGL APSGSPF
Sbjct: 343 ISSRKSHILNARRMRVMRSLGLTAPSGSPF 372


>GSVIVT01033695001 assembled CDS
          Length = 329

 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 51/193 (26%), Positives = 78/193 (40%), Gaps = 38/193 (19%)

Query: 33  GDITWVKLHGDSWWPAVVFGSNVSGDRE--IKG-VRVRLIGSYEYMYVDPIKCRSEFHIT 89
           G + W K     WWPA V     +  R   I G V V+  G++   +VDP +  S F   
Sbjct: 148 GSVVWAKTACQVWWPAEVMEEKSTDSRNQGIDGHVLVQYYGNHHSAWVDPDRDLSLFEDC 207

Query: 90  LEKNNGSYEEIFRKALEQDISQSNSSRVKGKVTKSKEG-----------EKAISKAS--- 135
            E+ + +  E F+ AL+Q + +        ++  S +G           EK IS  S   
Sbjct: 208 FEERSCNPMEDFQDALKQALHRKRHLNSCRQLVGSPDGPDNLHQQDQSSEKCISSCSSRT 267

Query: 136 KQDGVKRKLKLDSLNPEKNTKRKTSNRDGMQKKLKQKSSSTDAASPGRSQELSARRTKVM 195
           + D ++R                     G  K+ ++     DA +         RR ++M
Sbjct: 268 EDDSIER---------------------GRGKRKRKPKVHFDAVALPLKPARKVRRFRIM 306

Query: 196 QTLGLIAPSGSPF 208
           + LGLIAP GSPF
Sbjct: 307 RYLGLIAPVGSPF 319