Jatropha Genome Database

JcCB0004861.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0004861.20 - phase: 0 
         (356 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01035586001 assembled CDS                                       424   e-119
GSVIVT01002279001 assembled CDS                                        53   2e-07
GSVIVT01002665001 assembled CDS                                        53   3e-07

>GSVIVT01035586001 assembled CDS
          Length = 383

 Score =  424 bits (1090), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 221/315 (70%), Positives = 245/315 (77%), Gaps = 6/315 (1%)

Query: 42  PNTVPSLTIKAASSLSSPATHKTATSASPPDSPDRFRVDILSESLPYIQKFRGKTIVVKY 101
           P  VPS  IKA+ S S P   +++ S    D   + RV+ILSESLP+IQKFRGKTIVVKY
Sbjct: 75  PTIVPS--IKASLSTSQPPILESSKS----DLAGQLRVEILSESLPFIQKFRGKTIVVKY 128

Query: 102 GGAAMKVPELKAXXXXXXXXXXCVGLRPVLVHGGGPEINHWLKLLNIEPLFHEGLRVTDA 161
           GGAAMK P+L+A          CVGLRPV VHGGGPEIN WL    +EP F  GLRVTD 
Sbjct: 129 GGAAMKSPDLQASVINDLVLLSCVGLRPVFVHGGGPEINLWLGRFGLEPNFLNGLRVTDH 188

Query: 162 KTMEIVSMVLVGKVNKDLVSLINKAGATAVGLSGMDGRLLMARPTPNSAQLGFVGEVTRV 221
            TMEIV+MVLVGKVNK LVSLINKAGATAVGLSGMDGRLL ARP PNSAQLGFVG+V RV
Sbjct: 189 STMEIVTMVLVGKVNKHLVSLINKAGATAVGLSGMDGRLLTARPNPNSAQLGFVGDVARV 248

Query: 222 DSTILQPLIDNSHIPVIASVAADESGQSYNINADTVXXXXXXXXXXXXXXXXTDVAGILE 281
           D TIL+PLIDN+HIPVIASVA+DE+GQSYNINADTV                TDVAGILE
Sbjct: 249 DPTILRPLIDNNHIPVIASVASDETGQSYNINADTVAGELAASLGAEKLILLTDVAGILE 308

Query: 282 NKDDPKSLVKEIDIKGVKKLIEEKKVAGGMIPKVNCCVRSLAQGVRTASIIDGRVEHSLL 341
           N+DDP SLVK+IDIKGVKK+  E K+ GGMIPKVNCCVRSLAQGVRTASIIDGR+ HSLL
Sbjct: 309 NRDDPSSLVKQIDIKGVKKMEGEGKIGGGMIPKVNCCVRSLAQGVRTASIIDGRLPHSLL 368

Query: 342 HEIMSEEGIGTMITG 356
            EI+++EG GTMITG
Sbjct: 369 LEILTDEGAGTMITG 383


>GSVIVT01002279001 assembled CDS
          Length = 484

 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 54/204 (26%), Positives = 89/204 (43%), Gaps = 18/204 (8%)

Query: 69  SPPDSPDRFRVDILSESLPYIQKFRGKTIVVKYGGAAMKVPELKAXXXXXXXXXXCVGLR 128
           S P+  ++F V    E+ PY +  RG T VV   G  +  P L+            +G+R
Sbjct: 158 SVPEKNEQF-VRWFREAWPYFRAHRGGTFVVIISGEIVASPYLEPILKDISLLHG-LGIR 215

Query: 129 PVLVHGGGPEINHWLKLLNIEPLFHEGLRVTDAKTMEIVSMVLVGKVNKDLVSL------ 182
            VLV G   +I+  L     EP +    R+TD+ ++E  +M   G++   + ++      
Sbjct: 216 FVLVPGTHVQIDKLLAERGSEPKYVGQYRITDSASLE-AAMEAAGRIRIMIEAMLSPGPS 274

Query: 183 ---INKAGATA----VGLSGMDGRLLMA--RPTPNSAQLGFVGEVTRVDSTILQPLIDNS 233
              I + G  +    VG+S   G  L A  R        G  G V RVD + ++  +D S
Sbjct: 275 ICSIRRHGGNSRWHDVGVSVASGNFLAAKRRGVVEGIDYGATGLVKRVDVSRIRERLDAS 334

Query: 234 HIPVIASVAADESGQSYNINADTV 257
            I +++++    SG+  N N   V
Sbjct: 335 CIVILSNLGYSSSGEVLNCNTYEV 358


>GSVIVT01002665001 assembled CDS
          Length = 446

 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 53/202 (26%), Positives = 88/202 (43%), Gaps = 18/202 (8%)

Query: 71  PDSPDRFRVDILSESLPYIQKFRGKTIVVKYGGAAMKVPELKAXXXXXXXXXXCVGLRPV 130
           P+  ++F V    E+ PY +  RG T VV   G  +  P L+            +G+R V
Sbjct: 160 PEKNEQF-VRWFREAWPYFRAHRGGTFVVIISGEIVASPYLEPILKDISLLHG-LGIRFV 217

Query: 131 LVHGGGPEINHWLKLLNIEPLFHEGLRVTDAKTMEIVSMVLVGKVNKDLVSL-------- 182
           LV G   +I+  L     EP +    R+TD+ ++E  +M   G++   + ++        
Sbjct: 218 LVPGTHVQIDKLLAERGSEPKYVGQYRITDSASLE-AAMEAAGRIRIMIEAMLSPGPSIC 276

Query: 183 -INKAGATA----VGLSGMDGRLLMA--RPTPNSAQLGFVGEVTRVDSTILQPLIDNSHI 235
            I + G  +    VG+S   G  L A  R        G  G V RVD + ++  +D S I
Sbjct: 277 SIRRHGGNSRWHDVGVSVASGNFLAAKRRGVVEGIDYGATGLVKRVDVSRIRERLDASCI 336

Query: 236 PVIASVAADESGQSYNINADTV 257
            +++++    SG+  N N   V
Sbjct: 337 VILSNLGYSSSGEVLNCNTYEV 358