Jatropha Genome Database

JcCB0004861.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0004861.10 - phase: 0 /pseudo
         (337 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01031740001 assembled CDS                                       218   2e-57
GSVIVT01031746001 assembled CDS                                       215   2e-56
GSVIVT01020069001 assembled CDS                                       112   2e-25
GSVIVT01032922001 assembled CDS                                       112   3e-25
GSVIVT01031747001 assembled CDS                                        89   4e-18
GSVIVT01031742001 assembled CDS                                        86   3e-17
GSVIVT01031743001 assembled CDS                                        79   2e-15
GSVIVT01008714001 assembled CDS                                        70   2e-12

>GSVIVT01031740001 assembled CDS
          Length = 424

 Score =  218 bits (556), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 112/198 (56%), Positives = 124/198 (62%), Gaps = 46/198 (23%)

Query: 1   GFNWESWKTEGGWYNFLSNSVPELASSGITHVWLPPPSHSVSAE---------------- 44
           GFNWES K +GGWYNFL NS+PEL++SGITHVWLPPPS S ++E                
Sbjct: 29  GFNWESSKKQGGWYNFLINSIPELSASGITHVWLPPPSQSAASEGYLPGRLYDLNASHYG 88

Query: 45  ------------------------------EKQDNRGIWSIFEGGTPGDRLDWGPSFICS 74
                                         EK+D+RGIW+IFEGGTP DRLDWGPSFICS
Sbjct: 89  TQYELKALIKAFRSNGIQCIADIVINHRTAEKKDSRGIWAIFEGGTPDDRLDWGPSFICS 148

Query: 75  DDTLYSDGKGNPDTGADFNPAPDIDHVNPRVQRVLSDWMIWLKDEIGFDGWRFDFARRIF 134
           DDTL+SDG GNPDTGA F+PAPDIDHVNPRVQR LSDWM WLK EIGF GWRFDFAR   
Sbjct: 149 DDTLFSDGTGNPDTGAGFDPAPDIDHVNPRVQRELSDWMNWLKIEIGFAGWRFDFARGYS 208

Query: 135 TCFYKDINDKQKAKFCSG 152
             F K   +     F  G
Sbjct: 209 PDFTKLYMENTSPNFAVG 226



 Score = 94.7 bits (234), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 47/70 (67%), Positives = 56/70 (80%)

Query: 268 LKEEILKLIEVRTRNQIRPNSILRTLASDADHYMAAIDEKIIAKVGPNDDKGNLVPPTSQ 327
           LKEEI KLI +RTRN I+PNS++R LASD D Y+AAIDEKIIAK+GP  D GNLVP T +
Sbjct: 351 LKEEISKLISIRTRNGIKPNSVVRILASDPDLYVAAIDEKIIAKIGPRYDVGNLVPSTFK 410

Query: 328 IAASGIDYTV 337
           +A SG +Y V
Sbjct: 411 LATSGNNYAV 420


>GSVIVT01031746001 assembled CDS
          Length = 425

 Score =  215 bits (547), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 112/198 (56%), Positives = 121/198 (61%), Gaps = 46/198 (23%)

Query: 1   GFNWESWKTEGGWYNFLSNSVPELASSGITHVWLPPPSHSVSAE---------------- 44
           GFNWES K EGGWYNFL NS+PELA+SGITHVWLPPPS SVS E                
Sbjct: 29  GFNWESSKKEGGWYNFLINSIPELAASGITHVWLPPPSQSVSPEGYMPGRLYDLNASKYG 88

Query: 45  ------------------------------EKQDNRGIWSIFEGGTPGDRLDWGPSFICS 74
                                         EKQD RGIW+IFEGGTP DRLDW PSFIC 
Sbjct: 89  TQDELKTLIKVFHSKGVQCIADIVINHRTAEKQDARGIWAIFEGGTPDDRLDWTPSFICK 148

Query: 75  DDTLYSDGKGNPDTGADFNPAPDIDHVNPRVQRVLSDWMIWLKDEIGFDGWRFDFARRIF 134
           DDT YSDG GNPD+G D++ APDIDH+NPRVQ+ L DWM WLK EIGFDGWRFDFAR   
Sbjct: 149 DDTPYSDGTGNPDSGDDYSAAPDIDHINPRVQQELIDWMNWLKIEIGFDGWRFDFARGFS 208

Query: 135 TCFYKDINDKQKAKFCSG 152
             F K    K + KF  G
Sbjct: 209 PAFTKFYMAKTRPKFAVG 226



 Score = 86.3 bits (212), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 45/71 (63%), Positives = 56/71 (78%), Gaps = 1/71 (1%)

Query: 268 LKEEILKLIEVRTRNQIRPNSILRTLASDADHYMAAIDEKIIAKVGPNDDKGNLVPPT-S 326
           LKEEI+KLI +R+RN+I+PNS +R LASD+D Y+AAID KII K+GP  D GNLVP +  
Sbjct: 351 LKEEIMKLIIIRSRNRIKPNSAVRILASDSDLYVAAIDGKIIVKIGPRFDVGNLVPKSFK 410

Query: 327 QIAASGIDYTV 337
           +IA SG DY V
Sbjct: 411 KIATSGKDYCV 421


>GSVIVT01020069001 assembled CDS
          Length = 885

 Score =  112 bits (281), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 70/197 (35%), Positives = 93/197 (47%), Gaps = 52/197 (26%)

Query: 1   GFNWESWKTEGGWYNFLSNSVPELASSGITHVWLPPPSHSVSAE---------------- 44
           GFNWES K+ G WY  LS  V EL+S G T VWLPPP+ SVS E                
Sbjct: 499 GFNWESNKS-GRWYMELSKKVAELSSLGFTVVWLPPPTASVSPEGYMPTDLYNLNSRYGS 557

Query: 45  -----------------------------EKQDNRGIWSIFEGGTPGDRLDWGPSFICSD 75
                                        + Q+  GIW+IF     G RL+W    I +D
Sbjct: 558 SDELKVLVKSFHEVGVKVLGDVVLNHRCAQYQNQNGIWNIF-----GGRLNWDDRAIVAD 612

Query: 76  DTLYSDGKGNPDTGADFNPAPDIDHVNPRVQRVLSDWMIWLKDEIGFDGWRFDFARRIFT 135
           D  +  G+GN  +G +F+ AP+IDH    V+  + +W+ WL+ EIG+DGWR DF R  + 
Sbjct: 613 DPHFQ-GRGNKSSGDNFHAAPNIDHSQDFVREDIKEWLCWLRKEIGYDGWRLDFVRGFWG 671

Query: 136 CFYKDINDKQKAKFCSG 152
            + KD  D  +  F  G
Sbjct: 672 GYVKDYMDASEPYFAVG 688


>GSVIVT01032922001 assembled CDS
          Length = 975

 Score =  112 bits (279), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 65/197 (32%), Positives = 91/197 (46%), Gaps = 53/197 (26%)

Query: 1   GFNWESWKTEGGWYNFLSNSVPELASSGITHVWLPPPSHSVSAE---------------- 44
           GFNWESW+ +  WY  L+    +L+  GIT VWLPPP+ SV+ +                
Sbjct: 586 GFNWESWRRQ--WYLELAPKAADLSQCGITAVWLPPPTESVAPQGYMPSDLYNLNSAYGT 643

Query: 45  -----------------------------EKQDNRGIWSIFEGGTPGDRLDWGPSFICSD 75
                                         KQ   G+W+IF     G +L WGP  I  D
Sbjct: 644 MEELKHCIDEMHTQDLLALGDVVLNHRCAHKQSPNGVWNIF-----GGKLAWGPEAIVCD 698

Query: 76  DTLYSDGKGNPDTGADFNPAPDIDHVNPRVQRVLSDWMIWLKDEIGFDGWRFDFARRIFT 135
           D  +  G+GNP +G  F+ AP+IDH    V+R + +W+ WL+++IGFDGWR DF R    
Sbjct: 699 DPNFQ-GRGNPSSGDIFHAAPNIDHSQDFVRRDIKEWLNWLRNDIGFDGWRLDFVRGFSG 757

Query: 136 CFYKDINDKQKAKFCSG 152
            + K+  +     F  G
Sbjct: 758 TYVKEYIEVSNPAFAIG 774


>GSVIVT01031747001 assembled CDS
          Length = 272

 Score = 88.6 bits (218), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 51/89 (57%), Positives = 61/89 (68%), Gaps = 8/89 (8%)

Query: 251 SCRDMFIFSPIQGSHQY---LKEEILKLIEVRTRNQIRPNSILRTLASDADHYMAAIDEK 307
           S R +FIF      H +   LKEEILKLI +RTRN+I+PNS +R LASD D Y+A ID K
Sbjct: 7   STRFLFIFY----DHFFEWGLKEEILKLIMIRTRNRIKPNSAVRILASDLDLYVAVIDGK 62

Query: 308 IIAKVGPNDDKGNLVPPT-SQIAASGIDY 335
           II K+GP  D GNLVP +  +IA SG DY
Sbjct: 63  IIVKIGPGFDVGNLVPQSFKKIATSGKDY 91


>GSVIVT01031742001 assembled CDS
          Length = 129

 Score = 85.5 bits (210), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 43/68 (63%), Positives = 54/68 (79%), Gaps = 1/68 (1%)

Query: 268 LKEEILKLIEVRTRNQIRPNSILRTLASDADHYMAAIDEKIIAKVGPNDDKGNLVPPT-S 326
           LKEEI+KLI +R+RN+I+PNS +R LASD+D Y+AAID KII K+GP  D GNLVP +  
Sbjct: 62  LKEEIMKLIMIRSRNRIKPNSAVRILASDSDLYVAAIDGKIIVKIGPRFDVGNLVPKSFK 121

Query: 327 QIAASGID 334
           +IA SG D
Sbjct: 122 KIATSGKD 129


>GSVIVT01031743001 assembled CDS
          Length = 185

 Score = 79.3 bits (194), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 34/48 (70%), Positives = 40/48 (83%)

Query: 1   GFNWESWKTEGGWYNFLSNSVPELASSGITHVWLPPPSHSVSAEEKQD 48
           GFNWES K +GGWYNFL NS+PEL++SGITHVWLPPPS S ++E K  
Sbjct: 127 GFNWESSKKQGGWYNFLINSIPELSASGITHVWLPPPSQSNASEGKNQ 174


>GSVIVT01008714001 assembled CDS
          Length = 411

 Score = 69.7 bits (169), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 57/197 (28%), Positives = 82/197 (41%), Gaps = 56/197 (28%)

Query: 1   GFNWESWKTEGGWYNFLSNSVPELASSGITHVWLPPPSHSVSAE---------------- 44
           GFNWES K +  W+  L   VP++A SG T VWLPP S S S E                
Sbjct: 30  GFNWESHKHD--WWRNLEKKVPDVAKSGFTSVWLPPASQSFSPEGYLPQNLYSLNSSYGS 87

Query: 45  -----------------------------EKQDNRGIWSIFEGGTPGDRLDWGPSFICSD 75
                                          Q + G+++ ++ G P   L W    + S 
Sbjct: 88  EHLLKNLLQKLNQHKVRAMADIVINHRVGTTQGHGGMYNRYD-GIP---LSWNEHAVTS- 142

Query: 76  DTLYSDGKGNPDTGADFNPAPDIDHVNPRVQRVLSDWMIWLKDEIGFDGWRFDFARRIFT 135
               + G GN  +GA+F+  P+IDH    V+  L  W+ WL+  +GF  +RFDFAR    
Sbjct: 143 ---CTGGLGNRSSGANFHGVPNIDHTQNFVRNDLIGWLKWLRG-VGFQDFRFDFARGYSA 198

Query: 136 CFYKDINDKQKAKFCSG 152
            + K+  +  +  F  G
Sbjct: 199 KYVKEYIEGARPIFSVG 215