Jatropha Genome Database

JcCB0004761.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0004761.20 - phase: 0 /TE/pseudo
         (300 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01004252001 assembled CDS                                        70   9e-13
GSVIVT01004860001 assembled CDS                                        55   5e-08
GSVIVT01023876001 assembled CDS                                        53   1e-07
GSVIVT01037358001 assembled CDS                                        53   2e-07
GSVIVT01004123001 assembled CDS                                        49   3e-06

>GSVIVT01004252001 assembled CDS
          Length = 533

 Score = 70.5 bits (171), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 76/327 (23%), Positives = 135/327 (41%), Gaps = 53/327 (16%)

Query: 1   MRVFLLPLSLSDELHKFTNKFWWGLKKDGG---KGIHWLSWDRMCGRKKDGGMSFRNLHF 57
           +  F +P  +   L K    F WG    GG   + IH ++W+ +C +K+ GG+  R +  
Sbjct: 87  LSFFRMPKLVVKRLEKLQRDFLWG----GGSMERKIHLINWEVVCTQKESGGLGIRKIDL 142

Query: 58  FNVAMLEKQGWRLLTETDTLFYRIFKAKHFSRVDF---LNASLGSNPIFV*KNILTSSKL 114
            N A+L K  WR   E +  F+R      + ++ F      + G+  + V ++IL  S  
Sbjct: 143 LNKALLGKWIWRFAFE-ENFFWRKVVGVKYGQLGFGWRTKEARGTFGVGVWRDILKDSSW 201

Query: 115 LKHGVRWRVEDERDINVVKKPWIPRE----------------SSFVIEDGSSSIDP---D 155
               + ++V     ++     W   E                ++ V E   SS+     +
Sbjct: 202 CWDNIEFKVGKGTKVSFWTDHWCGNEVLSQAFPQLFALAVQRNASVNEMWDSSLGQGGWN 261

Query: 156 FRVQNLFCHEGKRWDIDKIMNLF-CANDVRAIVGIPLSIFNSPDVLVWHYKRRGIYSVKS 214
            R+   F      W++D +  L     D+R        I    D ++W  + RG + ++ 
Sbjct: 262 IRLSRNF----NDWELDALGELLHLLRDLR--------ISLEEDAVIWKEEGRGRFRIRD 309

Query: 215 SY-FMALKVFGKEPERRDGEIWGKLWRLSVPP-VKDFVWRVLRNVVPTKDRLRNRGLDID 272
           +Y  ++       P++        +W   VP  V  F W      V T D+L+ RG  + 
Sbjct: 310 AYKLLSGSNVITFPKK-------SIWVDKVPTKVAFFAWEASWEKVLTLDKLQRRGWQLP 362

Query: 273 RKCFFCDGEQE-INHVLVTCERARSVW 298
            +CF C  E+E +NH+L+ C   R++W
Sbjct: 363 NRCFLCGCEEENVNHILLHCTVVRALW 389


>GSVIVT01004860001 assembled CDS
          Length = 1243

 Score = 54.7 bits (130), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 73/318 (22%), Positives = 125/318 (39%), Gaps = 54/318 (16%)

Query: 6   LPLSLSDELHKFTNKFWWGLKKDGGKGIHWLSWDRMCGRKKDGGMSFRNLHFFNVAMLEK 65
           +P S++  L K    F W    +GGK  H + W+ +C  K+ GG+  R L   N A+L K
Sbjct: 1   MPKSVARRLEKLQRDFLWE-GANGGKKAHLVKWEVVCADKEKGGLGLRKLACLNKALLGK 59

Query: 66  QGWRLLTETDTLFYRIFKAKHFSRVDFLNASLGSNPIF---V*KNILTSSKLLKHGVRWR 122
             WR     + ++ ++ +AK + + DF   +  +N +F   V K IL         + ++
Sbjct: 60  WIWRFARAKEDIWKKVLEAK-YGQEDFGWRTRKANGVFGVGVWKEILKEFAWCWENMVFK 118

Query: 123 VEDERDINVVKKPW----IPRESS---FVIEDGSSSIDPDFRVQNL--------FCHEGK 167
           V     I     PW    +P +S    F +    +    +   QN         F     
Sbjct: 119 VGKGNKIRFWIDPWCGNNVPSQSFPNLFSMAAQRNVTVEEMWDQNFGQGGWNLRFLRAFN 178

Query: 168 RWDIDKIMNLFCANDVRAIVGIPLSIFNSPDVLVWHYKRRGIYSVKSSYFM----ALKVF 223
            W++D + NL        +     S+       +W     G++ VK +Y +    +L +F
Sbjct: 179 DWELDMVGNLLVEFREHRVTLEEHSV-------IWKEGGDGLFRVKRAYSVLASGSLFLF 231

Query: 224 GKEPE---RRDGEIWGKLWRLSVPPVKDFVWRVLRNVVPTKDRLRNRGLDIDRKCFFCDG 280
            ++     R+DG  W K         KD      + V    +RL+   +D+   C++  G
Sbjct: 232 DRKVLRYFRKDGHNWRK--------KKDG-----KTVKEAHERLKAGSIDV-LHCYYAHG 277

Query: 281 EQEINHVLVTCERARSVW 298
           E   N       + RS W
Sbjct: 278 EDNENF------QRRSYW 289


>GSVIVT01023876001 assembled CDS
          Length = 4608

 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 35/104 (33%), Positives = 53/104 (50%), Gaps = 10/104 (9%)

Query: 198  DVLVWHYKRRGIYSVKSSYF-MALKVFGKEPERRDGEIWGKLWRLSVPP-VKDFVWRVLR 255
            D ++W       +SVKS Y  ++ +  G  P        G +W  SVP  V  F W    
Sbjct: 4093 DRMMWKVTSNESFSVKSLYNDLSSRRAGLFPH-------GLIWNPSVPSKVSFFAWEAAW 4145

Query: 256  NVVPTKDRLRNRGLDIDRKCFFCDGEQE-INHVLVTCERARSVW 298
              V T D+L+ RG  +  +CF C  E+E I+H+L+ C +AR++W
Sbjct: 4146 GKVLTMDQLKKRGWAVANRCFMCCEEEESIDHILIHCSKARALW 4189


>GSVIVT01037358001 assembled CDS
          Length = 2456

 Score = 52.8 bits (125), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/81 (29%), Positives = 44/81 (54%), Gaps = 1/81 (1%)

Query: 1   MRVFLLPLSLSDELHKFTNKFWWGLKKDGGKGIHWLSWDRMCGRKKDGGMSFRNLHFFNV 60
           + +F +P S+  ++ +    F W   ++G +  H +SWD +C  K  GG+ F  +   N+
Sbjct: 884 LSLFKIPTSVVAKIERLQRDFLWSGIEEGKRN-HLVSWDVVCNPKAKGGLGFGKISLRNL 942

Query: 61  AMLEKQGWRLLTETDTLFYRI 81
           A+L K  WR L E   L++++
Sbjct: 943 ALLGKWLWRYLREGSALWHQV 963


>GSVIVT01004123001 assembled CDS
          Length = 386

 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 7/89 (7%)

Query: 1   MRVFLLPLSLSDELHKFTNKFWWGLKKDGG---KGIHWLSWDRMCGRKKDGGMSFRNLHF 57
           M +  LP  +   L K    F WG    GG   +  H + W+ +C  KK GG+  +NL  
Sbjct: 90  MSLLCLPSVVRRRLEKIQRDFLWG----GGNLERKPHLVRWEVVCLSKKKGGLGVKNLSI 145

Query: 58  FNVAMLEKQGWRLLTETDTLFYRIFKAKH 86
            N A+L K  WR   E + L+ ++ + K+
Sbjct: 146 LNKALLAKWNWRFANEREALWNQVIRGKY 174