Jatropha Genome Database

JcCB0004761.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0004761.10 + phase: 0 
         (97 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01031982001 assembled CDS                                        99   3e-22
GSVIVT01009716001 assembled CDS                                        98   6e-22
GSVIVT01018944001 assembled CDS                                        98   7e-22
GSVIVT01031975001 assembled CDS                                        96   3e-21
GSVIVT01009723001 assembled CDS                                        87   2e-18
GSVIVT01034001001 assembled CDS                                        69   4e-13
GSVIVT01008241001 assembled CDS                                        55   5e-09
GSVIVT01028262001 assembled CDS                                        55   7e-09
GSVIVT01036090001 assembled CDS                                        55   8e-09
GSVIVT01013684001 assembled CDS                                        54   1e-08

>GSVIVT01031982001 assembled CDS
          Length = 96

 Score = 99.4 bits (246), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 43/65 (66%), Positives = 54/65 (83%)

Query: 13 WTAKQHKLFEYALAMYDKDTPDRWRNIAKIVGDTNEEEVKREYDILVNDINNIELDKVPI 72
          WT+KQ+KLFE ALA+YDKDTPDRW+N+AK VG  + EEVKR Y+IL+ D+ +IE   VPI
Sbjct: 12 WTSKQNKLFEKALALYDKDTPDRWQNVAKAVGGKSAEEVKRHYEILIEDLKHIESGHVPI 71

Query: 73 PNYKN 77
          PNYK+
Sbjct: 72 PNYKS 76


>GSVIVT01009716001 assembled CDS
          Length = 91

 Score = 98.2 bits (243), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 51/97 (52%), Positives = 67/97 (69%), Gaps = 10/97 (10%)

Query: 1  MGSCSLSNPNSNWTAKQHKLFEYALAMYDKDTPDRWRNIAKIVGDTNEEEVKREYDILVN 60
          MGS S     +NWT KQ+KLFE AL MYDKDTPDRW+N+A+ VG    EEVKR Y++LV 
Sbjct: 1  MGSSS-----NNWTTKQNKLFENALVMYDKDTPDRWQNMARAVGGKTVEEVKRHYEMLVE 55

Query: 61 DINNIELDKVPIPNYKNCYEGKSRQESKIISNNEEER 97
          D+ +IE  +VP+PNY+     K+   +K  S N+EE+
Sbjct: 56 DVKHIESGQVPLPNYR-----KAGASNKGYSFNDEEQ 87


>GSVIVT01018944001 assembled CDS
          Length = 74

 Score = 98.2 bits (243), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 44/67 (65%), Positives = 53/67 (79%)

Query: 10 NSNWTAKQHKLFEYALAMYDKDTPDRWRNIAKIVGDTNEEEVKREYDILVNDINNIELDK 69
           S+WT KQ+KLFE ALA YDKDTPDRW+NIAK VG  + EEVKR Y+IL+ D+ +IE  K
Sbjct: 8  GSSWTPKQNKLFEKALAKYDKDTPDRWQNIAKAVGGKSAEEVKRHYEILIEDVKHIESGK 67

Query: 70 VPIPNYK 76
          VP PNY+
Sbjct: 68 VPFPNYR 74


>GSVIVT01031975001 assembled CDS
          Length = 111

 Score = 96.3 bits (238), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 44/66 (66%), Positives = 51/66 (77%)

Query: 13 WTAKQHKLFEYALAMYDKDTPDRWRNIAKIVGDTNEEEVKREYDILVNDINNIELDKVPI 72
          WTAKQ+K FE ALA+YDKDTPDRW N+A+ VG    EEVKR Y+ILV DI +I+ DKVP 
Sbjct: 25 WTAKQNKAFEEALAVYDKDTPDRWYNVARAVGGKTVEEVKRHYEILVEDIKSIDSDKVPF 84

Query: 73 PNYKNC 78
          PNYK  
Sbjct: 85 PNYKTT 90


>GSVIVT01009723001 assembled CDS
          Length = 102

 Score = 86.7 bits (213), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 40/64 (62%), Positives = 50/64 (78%)

Query: 13 WTAKQHKLFEYALAMYDKDTPDRWRNIAKIVGDTNEEEVKREYDILVNDINNIELDKVPI 72
          WT KQ+KLFE ALA+YDK+TPDRW NIAK VG  + EEVKR Y+IL  D+ +IE  +VP+
Sbjct: 16 WTQKQNKLFEEALALYDKNTPDRWANIAKAVGGKSAEEVKRHYEILEQDVMHIENGQVPL 75

Query: 73 PNYK 76
          P Y+
Sbjct: 76 PIYR 79


>GSVIVT01034001001 assembled CDS
          Length = 211

 Score = 68.9 bits (167), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 46/69 (66%)

Query: 10 NSNWTAKQHKLFEYALAMYDKDTPDRWRNIAKIVGDTNEEEVKREYDILVNDINNIELDK 69
           + WT +++KLFE ALA++DKDTPDRW  +A ++     E+V ++Y  L +DI++IE   
Sbjct: 26 GTKWTHEENKLFENALALHDKDTPDRWLKVAAMIPGKTVEDVIKQYKDLEDDISDIEAGL 85

Query: 70 VPIPNYKNC 78
          +PIP Y   
Sbjct: 86 IPIPGYSTS 94


>GSVIVT01008241001 assembled CDS
          Length = 252

 Score = 55.5 bits (132), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 47/86 (54%), Gaps = 1/86 (1%)

Query: 13 WTAKQHKLFEYALAMY-DKDTPDRWRNIAKIVGDTNEEEVKREYDILVNDINNIELDKVP 71
          W+ ++ K FE A+AM+  +D  + W  IA +V   + +E+K+ Y  LV D+N IE   +P
Sbjct: 8  WSREEEKAFENAIAMHWTEDCKEVWDKIASMVPGKSVDELKQHYQFLVEDVNAIEAGHIP 67

Query: 72 IPNYKNCYEGKSRQESKIISNNEEER 97
          +PNY        ++  K I   EEE 
Sbjct: 68 LPNYAADEASSEQERRKGIPWTEEEH 93


>GSVIVT01028262001 assembled CDS
          Length = 132

 Score = 55.1 bits (131), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 39/61 (63%)

Query: 6  LSNPNSNWTAKQHKLFEYALAMYDKDTPDRWRNIAKIVGDTNEEEVKREYDILVNDINNI 65
            N    W+ +++K FE ALA+ D+  PDRW+ +A +VG  + EEV++ Y IL+ D+  I
Sbjct: 4  FPNVLCEWSWEENKSFELALAVVDERDPDRWKVVAAMVGGKSAEEVEKHYVILLQDLQFI 63

Query: 66 E 66
          E
Sbjct: 64 E 64


>GSVIVT01036090001 assembled CDS
          Length = 225

 Score = 54.7 bits (130), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 39/61 (63%)

Query: 17 QHKLFEYALAMYDKDTPDRWRNIAKIVGDTNEEEVKREYDILVNDINNIELDKVPIPNYK 76
          Q KLFE AL +  ++TPDRW  IA  V   +  EV+R Y+ LV+D+  I+  +V +P Y+
Sbjct: 20 QDKLFERALVVIPEETPDRWDKIAAQVPGKSSSEVRRHYEDLVHDVAEIDSGRVELPLYE 79

Query: 77 N 77
          +
Sbjct: 80 D 80


>GSVIVT01013684001 assembled CDS
          Length = 195

 Score = 54.3 bits (129), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 38/56 (67%)

Query: 11 SNWTAKQHKLFEYALAMYDKDTPDRWRNIAKIVGDTNEEEVKREYDILVNDINNIE 66
          ++WT    K+FE ALA++ ++ PDRW +IA+ +     E++K  Y++LV D+ NIE
Sbjct: 13 THWTRLDDKIFEQALAIFPEEMPDRWLSIAQQLPGKTPEDMKLHYELLVEDVTNIE 68