Jatropha Genome Database

JcCB0004411.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0004411.20 - phase: 0 
         (595 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01019005001 assembled CDS                                       454   e-128
GSVIVT01025139001 assembled CDS                                       189   3e-48
GSVIVT01001185001 assembled CDS                                       140   2e-33
GSVIVT01001186001 assembled CDS                                       125   5e-29
GSVIVT01030613001 assembled CDS                                        64   2e-10

>GSVIVT01019005001 assembled CDS
          Length = 478

 Score =  454 bits (1168), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 225/395 (56%), Positives = 292/395 (73%), Gaps = 20/395 (5%)

Query: 32  LVKREDRKSLIVTEYGQISAVDISTGTI-GDYHLEFITLEPNSLFLPVILHSDMVFYVNT 90
           L  ++ R++++ TEYG+ISA  +S GT  G YHL+F TLEPNSLFLPV+LH+DMVFYV+T
Sbjct: 37  LFPKDKRETIVSTEYGEISAAQVSDGTRRGSYHLQFFTLEPNSLFLPVLLHTDMVFYVHT 96

Query: 91  GSGRLSWAEGGKELKRMD-IKKGDVYRLHPGSVFFMQSNLETERKKLRIYAIFSNADEGT 149
           GSG+L+WA   KE   +  +++GDVYRL PG+VF++QSNLE+ER+KLRIYAIF N ++G 
Sbjct: 97  GSGKLNWANEEKEKTTLTALRRGDVYRLKPGTVFYLQSNLESEREKLRIYAIFVNLEDGD 156

Query: 150 YE--PHIGAYSSINDLVLGFDTKLLQSAFKVPEEVIEEMKSAMRPPDIVHAAPQKKSILL 207
                 IGAYSSI+DLV GFD K+LQ+AF+V EE+IE + +A +PP IVH  P +   L 
Sbjct: 157 LNEVSSIGAYSSISDLVRGFDKKVLQAAFEVSEELIEAITNATKPPAIVHNVPARSENLW 216

Query: 208 EIEDRLLQAFVGNKDGTLYSSNGGHKKTKKVNLLDGKPDFENCNGWSVTVDKKDLKRLKG 267
             E R L+AF+G++  ++Y      K  K  N+ D  PDFENCNG ++TV  KD+K LKG
Sbjct: 217 GWEARFLKAFIGSQGHSIYDLENKKKAAKTFNIRDADPDFENCNGRALTVTTKDMKVLKG 276

Query: 268 SGISVFMVNLTKGSMMGPHWNPMANEIAVVLQGLGMVRVVCSSNVNET------------ 315
           S I +FMVNLTKGSMMGPHWNP+A EIAVVL+G G+VRVVCSSN  ++            
Sbjct: 277 SNIGIFMVNLTKGSMMGPHWNPLATEIAVVLEGQGIVRVVCSSNTTKSSSSNTTKSSSSN 336

Query: 316 ----ECKNMRFRVQEGDVFAIPRFHPMAQMAFNNESLVFMGFSTSTSKNDPQFLAGKRSV 371
               +C+N  FRV+EGDVF +PRFHPMAQM+FNN SLVFMGFST++  N PQFLAG+ SV
Sbjct: 337 STKFKCENRSFRVREGDVFVVPRFHPMAQMSFNNGSLVFMGFSTASKLNHPQFLAGESSV 396

Query: 372 FQTLNKEILALSFNVPNTTVDKLLNPQEEEIILEC 406
            +TL++++LA +FNV NTT+D+ L PQ E IIL+C
Sbjct: 397 LRTLDRDVLAAAFNVSNTTMDQFLTPQRESIILDC 431


>GSVIVT01025139001 assembled CDS
          Length = 380

 Score =  189 bits (481), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 120/371 (32%), Positives = 192/371 (51%), Gaps = 35/371 (9%)

Query: 63  HLEFITLEPNSLFLPVILHSDMVFYVNTGSGRLSWAEGGKELKRMDIKKGDVYRLHPGSV 122
           H+ FIT+EP SLF+P  L S ++ ++  G  ++  +    EL    +K GD+Y +  GS 
Sbjct: 2   HIGFITMEPKSLFVPQYLDSSLILFIRRGEAKVG-SIYNDELVEKQLKIGDLYTIPAGSA 60

Query: 123 FFMQSNLETERKKLRIYAIFSNADE-GTYEPH-IGAYSSINDLVLGFDTKLLQSAFKVPE 180
           F++ +  E +R  +      S + +  T++   +G  +    ++ GF  + L +AF +  
Sbjct: 61  FYLVNTGEGQRLHIICSIDMSESLKMDTFQSFFLGGGTHPTSILTGFAPETLSTAFNISM 120

Query: 181 EVIEEMKSAMRPPDIVH----AAPQKKSILLEI--EDRL--LQAFVG------NKDGTLY 226
             +EE+ +      I++      P   +  LE+  +D++  L+  +G       K GT +
Sbjct: 121 SELEEIMTRQEGGPIIYIKDSQQPSTWAKFLEMKTQDKVKHLKRIMGFDVETEQKHGTWW 180

Query: 227 S---------SNGGHKK----TKKVNLLDGKPDFENCNGWSVTVDKKDLKRLKGSGISVF 273
           S          N   K+    T+  NL D KPDF+N  GWS+ +D+ D   L  SG+ ++
Sbjct: 181 SWRKLLNSVIGNENKKQPVEPTEPYNLYDRKPDFKNSYGWSIALDESDYSALADSGVGIY 240

Query: 274 MVNLTKGSMMGPHWNPMANEIAVVLQGLGMVRVVCSSNVNETECKNMRFRVQEGDVFAIP 333
            VNLT GSMM PH NP A EI +VL+G G V+VV  +  +  + K     V+EGDVF +P
Sbjct: 241 SVNLTAGSMMAPHLNPTATEIGIVLKGSGTVKVVFPNGTSAMDAK-----VREGDVFWVP 295

Query: 334 RFHPMAQMAFNNESLVFMGFSTSTSKNDPQFLAGKRSVFQTLNKEILALSFNVPNTTVDK 393
           R+ P  Q+A       F GF+TS  +N PQFLAG  S+ +++     A++F V     D 
Sbjct: 296 RYFPFCQIASRTGPFEFFGFTTSARRNRPQFLAGANSLLKSMRGSEFAMAFGVSEDKYDH 355

Query: 394 LLNPQEEEIIL 404
           ++N Q E +IL
Sbjct: 356 MVNSQREAVIL 366


>GSVIVT01001185001 assembled CDS
          Length = 399

 Score =  140 bits (353), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 95/348 (27%), Positives = 171/348 (49%), Gaps = 20/348 (5%)

Query: 59  IGDYHLEFITLEPNSLFLPVILHSDMVFYVNTGSGRLSWAEGGKELKRMDIKKGDVYRLH 118
           + +Y   ++   P +  LP  L ++ V YV +G G LS    GK  +  +IK+GD+ R+ 
Sbjct: 52  LKNYRFVYLEANPQTFVLPAHLDAEAVVYVASGRGTLSLVSQGKR-ESFNIKQGDIVRIR 110

Query: 119 PGSVFFMQSNLETERKKLRIYAIFSN-ADEGTYEPHIG-AYSSINDLVLGFDTKLLQSAF 176
            G+  +M +    + KKLRI  +    A    ++P  G A  +       F  +LL SA 
Sbjct: 111 AGTTIYMIN--RDKNKKLRIAKLLQPVALPDEFQPFYGPAGENPQSFYRAFSEELLSSAL 168

Query: 177 KVPEEVIEEMKSAMRPPDIVHAAPQKKSILLEIEDRLLQAFVGNKDGTLYSSNGGHKKTK 236
           KV ++ ++ +              Q K ++++  ++ +QA    ++  ++    G  ++K
Sbjct: 169 KVEQDRVQRV-----------IKQQNKGVIVKASEQQIQALSQREESGMFPFPFGSTESK 217

Query: 237 KV-NLLDGKPDFENCNGWSVTVDKKDLKRLKGSGISVFMVNLTKGSMMGPHWNPMANEIA 295
           +V NLL  +P   N  G     D  + ++L+   I+V   N+TKGSM GP +N  A +IA
Sbjct: 218 RVFNLLSKEPSISNRYGRLHEADANEFQQLQDMDIAVSYSNITKGSMEGPFFNTRATKIA 277

Query: 296 VVLQGLGMVRVVCSSNVNETEC---KNMRFRVQEGDVFAIPRFHPMAQMAFNNESLVFMG 352
           VV++G G + + C     ++     + +   ++ G +F +P  HP+  +A NN +L  + 
Sbjct: 278 VVVKGEGYMEMACPHQQQQSASPHYQRLSSPLKRGMLFVVPAGHPLIVVAGNNRNLEIVC 337

Query: 353 FSTSTSKNDPQFLAGKRSVFQTLNKEILALSFNVPNTTVDKLLNPQEE 400
           F  +   N  + LAG +++   L KE   L+F++P   VD++   Q E
Sbjct: 338 FDVNAENNRRESLAGDKNIVNALEKEAKELAFSIPAREVDEVFAKQNE 385


>GSVIVT01001186001 assembled CDS
          Length = 1361

 Score =  125 bits (315), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 105/391 (26%), Positives = 176/391 (45%), Gaps = 33/391 (8%)

Query: 33  VKREDRKSLIVTEYGQISAVDI----STGTIGDYHLEFITLE--PNSLFLPVILHSDMVF 86
           V R+   + + T  G++  +++    S    G  +  FI LE  P +  +P    +++V 
Sbjct: 181 VFRDQHFAFLRTNQGEVKILEMFDRRSRLLRGLKNYRFICLEANPQTFVVPTHYDAEIVG 240

Query: 87  YVNTGSGRLSWAEGGKELKRMDIKKGDVYRLHPGSVFFMQSNLETERKKLRI-YAIFSNA 145
           +V +G G ++    GK +    I+ GD+ R+  G    + ++ + +  KLRI Y +    
Sbjct: 241 FVCSGQGTITMVCQGKRIS-FRIRIGDIVRIPAGITLHLINSHKNQ--KLRIAYFLLPVG 297

Query: 146 DEGTYEP-HIGAYSSINDLVLGFDTKLLQSAFKVPEEVIEEMKSAMRPPDIVHAAPQKKS 204
             G +EP H  A  +       F  KLL SAFKV E  +E +              Q K 
Sbjct: 298 IPGRFEPFHGAAGENPQSFYRAFSPKLLSSAFKVEEGTLERVFQQ-----------QTKG 346

Query: 205 ILLEIEDRLLQAFVGNKDGT---LYSSNGGHKKTKKVNLLDGKPDFENCNGWSVTVDKKD 261
             ++     +QA  G + G    ++    G  K    NLL+  P   N  G     D +D
Sbjct: 347 HFIKASGEQIQALSGGQHGEAAGIWPFTSGESKRPVFNLLNKDPSVCNNYGRLHEADAED 406

Query: 262 LKRLKGSGISVFMVNLTKGSMMGPHWNPMANEIAVVLQGLGMVRVVCSSNVNETE----- 316
            ++LK   I +   N+T+  MMGP +N  +  +A VL+G G + +VC     E +     
Sbjct: 407 FRQLKDMDIEISYANITQEGMMGPFFNSRSTMVAAVLEGEGYLEMVCPHLSGEKQQQQGA 466

Query: 317 ---CKNMRFRVQEGDVFAIPRFHPMAQMAFNNESLVFMGFSTSTSKNDPQFLAGKRSVFQ 373
               + +   ++ G +F +P  HP+A +A  + +L  + F  +   N  + LAGK +V  
Sbjct: 467 SPIYQKVSSSLRRGTLFVVPAGHPIAIVAGTSWNLEIVCFGINAENNRREPLAGKGNVVN 526

Query: 374 TLNKEILALSFNVPNTTVDKLLNPQEEEIIL 404
            L KE   L+F +P   VDK+   Q+EE+  
Sbjct: 527 GLEKEAKELAFALPAREVDKVFRKQKEELFF 557


>GSVIVT01030613001 assembled CDS
          Length = 356

 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 88/337 (26%), Positives = 140/337 (41%), Gaps = 43/337 (12%)

Query: 57  GTIGDYHLEFITLEPNSLFLPVILHSDMVFYVNTGSGRLSWAEGGKELKRMDIKKGDVYR 116
           G IG   L    LE +   LP    S  V YV  GSG         E K + IKKGD   
Sbjct: 35  GNIGASKL---ALEKHGFALPRYSDSSKVAYVLQGSGVAGIVLPESEEKVIAIKKGDAIA 91

Query: 117 LHPGSVFFMQSNLETERKKLRIYAIFSNADEGTYEPHIGAYSSINDLVLGFDTKLLQSAF 176
           L  G V +  +  +TE   L +         G +       +    L+ GF T+ +  A+
Sbjct: 92  LPFGVVTWWYNKEDTELVVLFLGETSKAHKAGEFTDFF--LTGTTGLMTGFTTEFVARAW 149

Query: 177 KVPEEVIEEMKSAMRPPDIVHAAPQKKSILLEIEDRLLQAFVGNKDGTLYSSNGGHKKTK 236
            + E+V + +        IV  A   K    +IE                     H+   
Sbjct: 150 DLEEKVAKLLVEKQSGVGIVKLADTFKMPEPKIE---------------------HRNGM 188

Query: 237 KVNLLDGKPDFENCNGWSVTV-DKKDLKRLKGSGISVFMVNLTKGSMMGPHWN-PMANEI 294
            +N  +   D +  NG  V V + K+L  +   G+   +V L  G+M  P ++   A ++
Sbjct: 189 ALNCEEAPLDIDIKNGGRVVVLNTKNLPLVGEVGLGADLVRLDGGAMCSPGFSCDSALQV 248

Query: 295 AVVLQGLGMVRVVC--SSNVNETECKNMRFRVQEGDVFAIPRFHPMAQMAFNNESLVFMG 352
             V++G G V+VV      V ET  K        G++F +PRF  ++++A  +     M 
Sbjct: 249 TYVVRGSGRVQVVGVDGKRVLETTLK-------AGNLFIVPRFFVVSKIADPDG----ME 297

Query: 353 FSTSTSKNDPQF--LAGKRSVFQTLNKEILALSFNVP 387
           + +  S  +P F  LAGK  V++ L+ ++L  +FN+P
Sbjct: 298 WFSIISTPNPIFTNLAGKTGVWKALSPQVLEAAFNIP 334