Jatropha Genome Database

JcCB0004411.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0004411.10 + phase: 0 
         (417 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01019004001 assembled CDS                                       464   e-131
GSVIVT01009670001 assembled CDS                                       405   e-113
GSVIVT01008770001 assembled CDS                                       179   2e-45
GSVIVT01033565001 assembled CDS                                       173   2e-43
GSVIVT01033263001 assembled CDS                                       145   5e-35
GSVIVT01007904001 assembled CDS                                       141   6e-34
GSVIVT01029794001 assembled CDS                                       130   1e-30
GSVIVT01024641001 assembled CDS                                       124   6e-29

>GSVIVT01019004001 assembled CDS
          Length = 332

 Score =  464 bits (1193), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 233/330 (70%), Positives = 262/330 (79%), Gaps = 7/330 (2%)

Query: 93  MRNGELPNSRLVCGYSSFDAIIGSSNLNGFVAGPSLKNFHTLSSAKLSAGAARDVSFDGN 152
           +RN E PN  LVCGY  FD +   + ++  + GP  KNFHT SS+  SAGAA DVSF G+
Sbjct: 3   LRNQEPPNRSLVCGYLIFD-VTRRNCISNPLDGPWFKNFHTWSSSCYSAGAAPDVSFGGS 61

Query: 153 SREEQLGNSTMVSGQ------TLKLLSGSCYLPHPDKEETGGEDAHFICADEQXXXXXXX 206
           S +EQL  S   S Q      TLKL+SGSCYLPHPDKEETGGEDAHFIC DEQ       
Sbjct: 62  SSDEQLSKSAASSDQAILGHRTLKLISGSCYLPHPDKEETGGEDAHFICIDEQAIGVADG 121

Query: 207 XXXXXXXXXNAGLYSRELMSNSVSAIKDEPVGSIDPARVLEKAHSNTKAKGSSTACIVAL 266
                    +AG Y+RELMSNSV+AI++EP GSIDP+RVLEKAHS+TKAKGSSTACIVAL
Sbjct: 122 VGGWADVGVDAGEYARELMSNSVTAIQEEPKGSIDPSRVLEKAHSSTKAKGSSTACIVAL 181

Query: 267 TNEGIRAINLGDSGFMVVRDGSTVFQSPVQQHGFNFTYQLESGNHGDQPSSSQVFIFPVS 326
           T++G++AINLGDSGF+VVRDG T+FQSPVQQHGFNFTYQLESG  GD PSS QVF  PV+
Sbjct: 182 TDQGLQAINLGDSGFIVVRDGCTIFQSPVQQHGFNFTYQLESGRAGDLPSSGQVFTIPVA 241

Query: 327 PGDVIVAGTDGLFDNLYNNEVTAAVVHAARAGLGPQATAQKIADLARQRALDRNRQTPFS 386
           PGDVIVAGTDGLFDNLYN+EVTA VVHA RAGLGPQ TAQKIA LARQRA DR RQTPFS
Sbjct: 242 PGDVIVAGTDGLFDNLYNSEVTAVVVHAVRAGLGPQVTAQKIAALARQRAQDRMRQTPFS 301

Query: 387 AAAQDAGFRYYGGKLDDITVVVSYVMSSNN 416
            AAQDAGFRYYGGKLDDITVVVS++ S++N
Sbjct: 302 TAAQDAGFRYYGGKLDDITVVVSFITSTSN 331


>GSVIVT01009670001 assembled CDS
          Length = 286

 Score =  405 bits (1040), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 197/276 (71%), Positives = 221/276 (80%), Gaps = 6/276 (2%)

Query: 147 VSFDGNSREEQLGNSTMVSGQ------TLKLLSGSCYLPHPDKEETGGEDAHFICADEQX 200
           +SF  +  EEQL NS++ S Q      TLK LSGSCYLPHPDKEETGGEDAHFIC DE  
Sbjct: 1   MSFHNSQLEEQLANSSVSSEQNIQSDRTLKFLSGSCYLPHPDKEETGGEDAHFICIDEHA 60

Query: 201 XXXXXXXXXXXXXXXNAGLYSRELMSNSVSAIKDEPVGSIDPARVLEKAHSNTKAKGSST 260
                          ++G Y+RELMSNSV+AI++EP GS+DPARVLEKAH +TKAKGSST
Sbjct: 61  IGVADGVGGWAELGVDSGQYARELMSNSVTAIQEEPKGSVDPARVLEKAHFSTKAKGSST 120

Query: 261 ACIVALTNEGIRAINLGDSGFMVVRDGSTVFQSPVQQHGFNFTYQLESGNHGDQPSSSQV 320
           ACI+ALT +G+ AINLGDSGF+V+RDG TVF+SPVQQH FNFTYQLESGN GD PSS QV
Sbjct: 121 ACIIALTEQGLHAINLGDSGFIVIRDGCTVFRSPVQQHDFNFTYQLESGNGGDLPSSGQV 180

Query: 321 FIFPVSPGDVIVAGTDGLFDNLYNNEVTAAVVHAARAGLGPQATAQKIADLARQRALDRN 380
           F  PV+PGDV++AGTDGLFDNLYNNEV A VVHA RA LGPQ TAQKIA LARQRA D+N
Sbjct: 181 FTIPVAPGDVVIAGTDGLFDNLYNNEVIAVVVHATRASLGPQVTAQKIAALARQRAQDKN 240

Query: 381 RQTPFSAAAQDAGFRYYGGKLDDITVVVSYVMSSNN 416
           RQTPFS AAQDAG RYYGGKLDDITVVVSY+ S +N
Sbjct: 241 RQTPFSTAAQDAGIRYYGGKLDDITVVVSYITSYSN 276


>GSVIVT01008770001 assembled CDS
          Length = 288

 Score =  179 bits (454), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 97/250 (38%), Positives = 148/250 (59%), Gaps = 1/250 (0%)

Query: 163 MVSGQTLKLLSGSCYLPHPDKEETGGEDAHFICADEQXXXXXXXXXXXXXXXXNAGLYSR 222
           ++S ++L +  GS Y+P  +K  T G+DA+FI    Q                + G Y+R
Sbjct: 3   ILSERSLIMDLGSFYIPDKNKSSTKGDDAYFISKHHQTIGLADGVAGWAEQGIDGGEYAR 62

Query: 223 ELMSNSVSAIKDEPVGSIDPARVLEKAHSNTKAKGSSTACIVALTNEGIRAINLGDSGFM 282
           +LM N V+ +  E    + P  VLEKA+SNT  +GSSTACI+ L  E +  +N+GDSGFM
Sbjct: 63  QLMDNCVTTLYAEEKEIVYPQIVLEKAYSNTNVEGSSTACIITLMKEYLNVVNVGDSGFM 122

Query: 283 VVRDGSTVFQSPVQQHGFNFTYQLESGNHGDQPSSSQVFIFPVSPGDVIVAGTDGLFDNL 342
           + R+G+ +++S +QQ+ FN  YQL   +  D PS ++  I  V  GDV+V GTDGLFDN+
Sbjct: 123 LFRNGNMIYKSSIQQYFFNCPYQLGKSSGCDDPSIAKELIIGVRAGDVVVVGTDGLFDNV 182

Query: 343 YNNEVTAAV-VHAARAGLGPQATAQKIADLARQRALDRNRQTPFSAAAQDAGFRYYGGKL 401
           + +E+  A+ V      L PQ  A+ +A+ A + +L ++  +P++ AA   G    GGK 
Sbjct: 183 FVSEMEVAIRVLRDEGCLKPQLLAKLLAEQALENSLIKSGDSPYTIAASKEGKFRSGGKP 242

Query: 402 DDITVVVSYV 411
           DDITV+V+ +
Sbjct: 243 DDITVIVARI 252


>GSVIVT01033565001 assembled CDS
          Length = 1379

 Score =  173 bits (438), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 95/233 (40%), Positives = 136/233 (58%), Gaps = 2/233 (0%)

Query: 163  MVSGQTLKLLSGSCYLPHPDKEETGGEDAHFIC-ADEQXXXXXXXXXXXXXXXXNAGLYS 221
            M   ++LK+   S Y+P  +     GEDAHFI  AD Q                + G Y+
Sbjct: 1031 MKRKRSLKMNLESYYIPKQNISNPKGEDAHFIHKADYQTIGVADGVGGWTQRGVDEGKYA 1090

Query: 222  RELMSNSVSAIKDEPVGSIDPARVLEKAHSNTKAKGSSTACIVALTNEG-IRAINLGDSG 280
            RELM N V A+  E  G ++P  VL +A+  TKA GSSTACI+ LT +  +  +N+GDSG
Sbjct: 1091 RELMKNCVLALDSENKGVVNPMMVLNEAYFKTKAPGSSTACIITLTRDNYLHVVNVGDSG 1150

Query: 281  FMVVRDGSTVFQSPVQQHGFNFTYQLESGNHGDQPSSSQVFIFPVSPGDVIVAGTDGLFD 340
            FM+ RDG  V++SP+QQ GFN  YQL      D+PSS++     V   D++V GTDGLFD
Sbjct: 1151 FMLFRDGEMVYKSPIQQRGFNCPYQLGRSKGSDRPSSAEELKVAVKERDILVVGTDGLFD 1210

Query: 341  NLYNNEVTAAVVHAARAGLGPQATAQKIADLARQRALDRNRQTPFSAAAQDAG 393
            N++ +E+   + +  + GL P+  A  +A+LA   +LD++  TPF+ A + AG
Sbjct: 1211 NMFVSEMKEIIGNVEKEGLTPKELAWTLAELASYNSLDKDGDTPFAQAKRFAG 1263


>GSVIVT01033263001 assembled CDS
          Length = 229

 Score =  145 bits (365), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 75/195 (38%), Positives = 121/195 (62%), Gaps = 7/195 (3%)

Query: 220 YSRELMSNSVSAIKDEPVGSIDPARVLEKAHSNTKAKGSSTACIVALTNEGIRAINLGDS 279
           + R+L  N  S I ++  G I+P  +L  A+  TK  GSSTACI+ L    + A+N+GD+
Sbjct: 39  FVRDLADNC-SHIANKIKGLINPIDLLNHAYLETKVPGSSTACIITLNEWCLHAVNIGDN 97

Query: 280 GFMVVRDGSTVFQSPVQQHGFNFTYQLESGNHGDQPSSSQVFIFPVSPGDVIVAGTDGLF 339
           GF+++R+   +++SPVQQH +   YQL  GN  D  S  ++ +  + PGD+I+AG+ GLF
Sbjct: 98  GFILLRNEEILYESPVQQHTYKTPYQL--GNAND--SLEEIKLTELEPGDIIIAGSAGLF 153

Query: 340 DNLYNNEVTAAVVHAARA--GLGPQATAQKIADLARQRALDRNRQTPFSAAAQDAGFRYY 397
           +NL+ +E+   V+   R      P   A +IA  A +R++D+ R TP+S AA  AG R+ 
Sbjct: 154 NNLFTHEIKDLVIKEIRKDPAPSPDMIAAEIAKNAIERSIDKYRFTPYSKAAWQAGKRHK 213

Query: 398 GGKLDDITVVVSYVM 412
           GGK+ D+T + ++++
Sbjct: 214 GGKMGDVTAIFAFIL 228


>GSVIVT01007904001 assembled CDS
          Length = 229

 Score =  141 bits (356), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 70/190 (36%), Positives = 118/190 (62%), Gaps = 6/190 (3%)

Query: 225 MSNSVSAIKDEPVGSIDPARVLEKAHSNTKAKGSSTACIVALTNEGIRAINLGDSGFMVV 284
           + N+   I ++  G I+P  +L  A+  TK  GSSTACI+ L    + A+N+GD+GF+++
Sbjct: 43  LVNNCFHIANKIKGFINPIDLLNHAYLETKVPGSSTACIITLNEWCLHAVNMGDNGFILL 102

Query: 285 RDGSTVFQSPVQQHGFNFTYQLESGNHGDQPSSSQVFIFPVSPGDVIVAGTDGLFDNLYN 344
           R+   +++SPVQQH +   YQL   N  D P   ++ +  + PGD+I+AG+ GLF+NL+ 
Sbjct: 103 RNEEILYESPVQQHTYKTPYQLGKAN--DSP--EEIKLTELEPGDIIIAGSAGLFNNLFT 158

Query: 345 NEVTAAVVHAARA--GLGPQATAQKIADLARQRALDRNRQTPFSAAAQDAGFRYYGGKLD 402
           +E+   V++  R      P   A +IA  A +R++D+ R TP+S AA  AG R+ GGK+ 
Sbjct: 159 HEIKDLVINEIRKDPAPSPDMIAAEIAKNATERSIDKCRFTPYSKAAWLAGKRHKGGKIG 218

Query: 403 DITVVVSYVM 412
           ++T + ++++
Sbjct: 219 EVTAIFAFIL 228


>GSVIVT01029794001 assembled CDS
          Length = 772

 Score =  130 bits (327), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 86/256 (33%), Positives = 139/256 (54%), Gaps = 9/256 (3%)

Query: 159 GNSTMVSGQTLKLLSGSCYLPHPDKEETGGEDAHFICADEQXXXXXXXXXXXXXXXXNAG 218
           G   +++G  L L SG+  LPHP K  TGGEDA+F+ A +                 N G
Sbjct: 519 GEEILMTG--LALSSGAALLPHPSKALTGGEDAYFV-AFQNWFGVADGVGQWSLEGINGG 575

Query: 219 LYSRELMSNSVSAI-KDEPVGSIDPARVLEKAHSNTKAKGSSTACIVALTNEGIRAINLG 277
           LY+RE+M N    + K + +   +P  +L ++ +  ++ G ST  +     + +R  N+G
Sbjct: 576 LYAREVMDNCEEIVFKCKGIPITNPREILNRSVAEAQSPGLSTVLVAYFNGQVLRVANIG 635

Query: 278 DSGFMVVRDGSTVFQSPVQQHGFNFTYQLESGNHGDQPSS-SQVFIFPVSPGDVIVAGTD 336
           D+GF+++R G+   +S    + FNF  ++E G   D PS   + +   +  GDVI+  TD
Sbjct: 636 DTGFLIIRHGAVFQRSSPMVYEFNFPLRIEKG---DDPSELIEEYKIDLDEGDVIITATD 692

Query: 337 GLFDNLYNNEVTAAVVHAARAGLGPQATAQKIADLARQRALDRNRQTPFSAAAQ-DAGFR 395
           GLFDN+Y  E+ + V  + +A L P+  A+ +A  A++     + ++PF+ AA+      
Sbjct: 693 GLFDNIYEPEIISIVSKSLQANLKPKEIAELLAMRAQEVGRSSSTRSPFADAAKAAGYGG 752

Query: 396 YYGGKLDDITVVVSYV 411
           Y GGKLDD+TV+VS V
Sbjct: 753 YTGGKLDDVTVIVSSV 768


>GSVIVT01024641001 assembled CDS
          Length = 311

 Score =  124 bits (312), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 83/254 (32%), Positives = 133/254 (52%), Gaps = 18/254 (7%)

Query: 174 GSCYLPHPDKEETGGEDAHFICA-DEQXXXXXXXXXXXXXXXXNAGLYSRELMSNSVSAI 232
           G+  +PHP+K + GGEDA F+ + +                  +  L+ +ELM+N+   +
Sbjct: 63  GTHLIPHPNKVDRGGEDAFFVSSYNGGVVAVADGVSGWAEQNVDPSLFPKELMANASDLV 122

Query: 233 KDEPVGSIDPARVLEKAHSNTKAKGSSTACIVALTNEGIRAI-NLGDSGFMVVRDGSTVF 291
            DE V + DP  +L+KAH+ T +KGS+T  +  L   G+  I ++GD G  V+R G  +F
Sbjct: 123 GDEEV-NYDPQILLKKAHTATSSKGSATVIVAMLEKNGVLKIASVGDCGLRVIRKGKLIF 181

Query: 292 QSPVQQHGFNFTYQLESGNHGDQPSSSQVFIFPVSPGDVIVAGTDGLFDNLYNNEVTAAV 351
            +  Q+H F+  YQL S         + V    +  GD IV G+DGLFDN++++E+ + +
Sbjct: 182 STLPQEHYFDCPYQLSSEVITQTYLDATVTSVKLLEGDTIVMGSDGLFDNVFDHEIVSTI 241

Query: 352 VHAARAGLGPQATAQKIADLARQRALDRNRQTPFSAAAQDAGF-----------RYYGGK 400
              + A    +A A   ++     ++D N ++P+S  A+  GF           +  GGK
Sbjct: 242 TQYSDAAEAAKALADLASN----HSMDSNFESPYSLEARTRGFDVPFWKKVLGVKLTGGK 297

Query: 401 LDDITVVVSYVMSS 414
            DDITVVV  V+SS
Sbjct: 298 PDDITVVVGQVVSS 311