Jatropha Genome Database

JcCB0004391.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0004391.10 - phase: 0 
         (334 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01013474001 assembled CDS                                       470   e-133
GSVIVT01022262001 assembled CDS                                       268   2e-72
GSVIVT01034581001 assembled CDS                                       249   2e-66
GSVIVT01032677001 assembled CDS                                       164   6e-41
GSVIVT01024574001 assembled CDS                                       157   7e-39
GSVIVT01025202001 assembled CDS                                       148   3e-36
GSVIVT01029267001 assembled CDS                                        84   1e-16
GSVIVT01014731001 assembled CDS                                        75   6e-14
GSVIVT01016383001 assembled CDS                                        53   2e-07

>GSVIVT01013474001 assembled CDS
          Length = 344

 Score =  470 bits (1209), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 231/343 (67%), Positives = 272/343 (79%), Gaps = 10/343 (2%)

Query: 1   MEEKKSSSVSDVGAWAMNVFSSIGIIMVNKQLMSSTGFAFVFATTLTGLHFSMTALVGLI 60
           ME  K SSVSDVGAWAMNV SS+GIIM NKQLMS++G+AF FATTLTG HF++TALVGL+
Sbjct: 1   MESDKKSSVSDVGAWAMNVISSVGIIMANKQLMSASGYAFSFATTLTGFHFAVTALVGLV 60

Query: 61  SNAAGYSASKHIPMWELIWFSVVANVSITGMNLSLMLNSVGFYQISKLSMIPVVCVMEWI 120
           SNA GYSASK++P+WEL+WFS+VAN+SITGMNLSLMLNSVGFYQISKLSMIPVVCVMEWI
Sbjct: 61  SNATGYSASKYVPLWELLWFSIVANMSITGMNLSLMLNSVGFYQISKLSMIPVVCVMEWI 120

Query: 121 LHGKHYSKEXXXXXXXXXXXXXXXXXXXXXXNAKGFVCACVAVXXXXXXXXXXXXXXKKY 180
           LH KHYS+E                      NAKGF+CACVAV              KKY
Sbjct: 121 LHNKHYSREVKISVVVVVIGVGVCTVTDVKVNAKGFICACVAVVSTSLQQISIGSLQKKY 180

Query: 181 SVGSFELLSKTAPIQALSLLVTGPFIDYYLSGELLSDYAITWGAFFFIILSCSLAVFCNV 240
           S+GSFELLSKTAPIQ++SLLV GPFIDY+L+G+ +++Y ++ G  FFI+LSCSLAVFCNV
Sbjct: 181 SIGSFELLSKTAPIQSISLLVLGPFIDYFLNGKFITNYKLSSGVIFFILLSCSLAVFCNV 240

Query: 241 SQYLCIGRFSAVSFQVLGHMKTVCVLILGWVLFDSQLTLKNIMGMAIAVAGMIIYSWAVE 300
           SQYLCIGRFSAVSFQVLGHMKTVCVL LGW+LFDS+LT KNI GM +AV GMIIYSWAVE
Sbjct: 241 SQYLCIGRFSAVSFQVLGHMKTVCVLTLGWLLFDSELTFKNISGMIVAVVGMIIYSWAVE 300

Query: 301 VEKQ----TKSNI---LLQEDIKLLTD---QSLLKDVQFGQSK 333
           +EKQ    T SN+   L +E+I+LL D   ++ +KD++ G+SK
Sbjct: 301 IEKQANAKTMSNVKNSLTEEEIRLLKDGIEKTPVKDIELGESK 343


>GSVIVT01022262001 assembled CDS
          Length = 335

 Score =  268 bits (686), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 146/297 (49%), Positives = 194/297 (65%), Gaps = 5/297 (1%)

Query: 3   EKKSSSVSDVGAWAMNVFSSIGIIMVNKQLMSSTGFAFVFATTLTGLHFSMTALVGLISN 62
           +KK++   D  AW  NV +S+GIIMVNK LM++ GF+F  ATTLTGLHF+ T L+  +  
Sbjct: 8   DKKATV--DAAAWMFNVVTSVGIIMVNKALMATYGFSF--ATTLTGLHFATTTLMTTVLR 63

Query: 63  AAGYSASKHIPMWELIWFSVVANVSITGMNLSLMLNSVGFYQISKLSMIPVVCVMEWILH 122
             GY    H+P+ EL+ F + AN+SI GMN+SLM NSVGFYQI+KLSMIPV CV+E +L 
Sbjct: 64  WLGYIQGSHLPVSELLRFVLFANLSIVGMNVSLMWNSVGFYQIAKLSMIPVSCVLEVVLD 123

Query: 123 GKHYSKEXXXXXXXXXXXXXXXXXXXXXXNAKGFVCACVAVXXXXXXXXXXXXXXKKYSV 182
              YS++                      NAKGF+ A VAV              +KYS+
Sbjct: 124 KMRYSRDTKLSISLVLLGVAVCTVTDVSVNAKGFIAAFVAVWSTALQQYYVHFLQRKYSL 183

Query: 183 GSFELLSKTAPIQALSLLVTGPFIDYYLSGELLSDYAITWGAFFFIILSCSLAVFCNVSQ 242
           GSF LL  TAP+QA SLL+ GPF+DY+L+ + + +Y  +  +  FIILSC++AV  N+SQ
Sbjct: 184 GSFNLLGHTAPVQAASLLLLGPFLDYWLTNKRVDNYQYSLISVMFIILSCTIAVGTNLSQ 243

Query: 243 YLCIGRFSAVSFQVLGHMKTVCVLILGWVLFDSQ-LTLKNIMGMAIAVAGMIIYSWA 298
           ++CIGRF+AVSFQV+GHMKT+ VLILG++ F  + L L  ++GM IAV GMI Y  A
Sbjct: 244 FICIGRFTAVSFQVIGHMKTILVLILGFLFFGKEGLNLHVVLGMIIAVVGMIWYGNA 300


>GSVIVT01034581001 assembled CDS
          Length = 335

 Score =  249 bits (635), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 135/282 (47%), Positives = 179/282 (63%), Gaps = 3/282 (1%)

Query: 15  WAMNVFSSIGIIMVNKQLMSSTGFAFVFATTLTGLHFSMTALVGLISNAAGYSASKHIPM 74
           W  NV +S+GII+VNK LM++ GF+F  ATTLTGLHF  T L+  I    GY    H+P+
Sbjct: 18  WMFNVVTSVGIILVNKALMATYGFSF--ATTLTGLHFVTTTLMTAILRWLGYIQPSHLPL 75

Query: 75  WELIWFSVVANVSITGMNLSLMLNSVGFYQISKLSMIPVVCVMEWILHGKHYSKEXXXXX 134
            EL+ F + AN SI GMN+SLM NSVGFYQI+KLSMIPV C++E +L    YS++     
Sbjct: 76  PELLKFVLFANFSIVGMNVSLMWNSVGFYQIAKLSMIPVSCLLEVVLDKIRYSRDTKLSI 135

Query: 135 XXXXXXXXXXXXXXXXXNAKGFVCACVAVXXXXXXXXXXXXXXKKYSVGSFELLSKTAPI 194
                            N +GF+ A +AV              +KYS+ SF LL  TAP 
Sbjct: 136 SVVLLGVAVCTVTDVSVNTRGFIAAFIAVWSTSLQQYYVHFLQRKYSLSSFNLLGHTAPA 195

Query: 195 QALSLLVTGPFIDYYLSGELLSDYAITWGAFFFIILSCSLAVFCNVSQYLCIGRFSAVSF 254
           QA SLL+ GPF+DY+L+ + +  Y     +  FIILSC++AV  N+SQ++CIGRF+AVSF
Sbjct: 196 QAGSLLLLGPFLDYWLTNKRVDMYQYNTASLIFIILSCTIAVGTNLSQFICIGRFTAVSF 255

Query: 255 QVLGHMKTVCVLILGWVLFDSQ-LTLKNIMGMAIAVAGMIIY 295
           QVLGHMKT+ VLI+G+  F  + L L+ ++GM IAV GM+ Y
Sbjct: 256 QVLGHMKTILVLIMGFFFFGKEGLNLQVVLGMIIAVVGMMWY 297


>GSVIVT01032677001 assembled CDS
          Length = 353

 Score =  164 bits (415), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 107/319 (33%), Positives = 169/319 (52%), Gaps = 26/319 (8%)

Query: 1   MEEKKSSSVSDVGAWAMNVFSSIGIIMVNKQLMSSTGFAFVFATTLTGLHFSMTALVGLI 60
           M E K   +  +GA +++V SS+ I++ NK L+SS GF F  ATTLT  H  +T      
Sbjct: 1   MSENKGFELGTIGALSLSVVSSVSIVICNKALISSLGFTF--ATTLTSWHLLVTF----- 53

Query: 61  SNAAGYSASKHIPMW------------ELIWFSVVANVSITGMNLSLMLNSVGFYQISKL 108
                   S H+ +W             ++ F ++  +SI  +NLSL  NSVGFYQ++KL
Sbjct: 54  -------CSLHVALWMKLFEHKPFDAKAVMGFGILNGISIGLLNLSLGFNSVGFYQMTKL 106

Query: 109 SMIPVVCVMEWILHGKHYSKEXXXXXXXXXXXXXXXXXXXXXXNAKGFVCACVAVXXXXX 168
           ++IP   ++E +   K +S+                       NA G + + +AV     
Sbjct: 107 AIIPCTVLLETLFFRKKFSRSIQLALSILLMGVGIATVTDLQLNALGSILSVLAVITTCI 166

Query: 169 XXXXXXXXXKKYSVGSFELLSKTAPIQALSLLVTGPFIDYYLSGELLSDYAITWGAFFFI 228
                    KK+ V S +LL ++ P QAL+L ++GPF+D++L+ + +  +  T     FI
Sbjct: 167 AQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFISGPFLDWFLTSQNVFAFKYTPQVLVFI 226

Query: 229 ILSCSLAVFCNVSQYLCIGRFSAVSFQVLGHMKTVCVLILGWVLFDSQLTLKNIMGMAIA 288
           +LSC ++V  N S +L IG+ S V++QVLGH+KT  VL  G+VL     + +NI+G+ IA
Sbjct: 227 VLSCLISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIA 286

Query: 289 VAGMIIYSWAVEVEKQTKS 307
           + GM++YS+    E Q K+
Sbjct: 287 LVGMVLYSYYCTREGQQKT 305


>GSVIVT01024574001 assembled CDS
          Length = 352

 Score =  157 bits (397), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 107/320 (33%), Positives = 167/320 (52%), Gaps = 26/320 (8%)

Query: 1   MEEKKSSSVSDVGAWAMNVFSSIGIIMVNKQLMSSTGFAFVFATTLTGLHFSMTALVGLI 60
           M E +   +  VGA +++V SS+ I++ NK L+SS GF+F  ATTLT  H  +T      
Sbjct: 1   MGESQRFQLGTVGALSLSVVSSVSIVICNKALISSLGFSF--ATTLTSWHLLVTF----- 53

Query: 61  SNAAGYSASKHIPMW------------ELIWFSVVANVSITGMNLSLMLNSVGFYQISKL 108
                   S H+ +W             ++ F ++   SI  +NLSL  NSVGFYQ++KL
Sbjct: 54  -------CSLHVALWMKLFEHKPFDARAVMGFGILNGTSIGLLNLSLGFNSVGFYQMTKL 106

Query: 109 SMIPVVCVMEWILHGKHYSKEXXXXXXXXXXXXXXXXXXXXXXNAKGFVCACVAVXXXXX 168
           ++IP   ++E +   K +S+                       NA G V + +AV     
Sbjct: 107 AIIPCTVLLETLFFRKRFSRSIQLSLSILLLGVGIATVTDLQLNALGSVLSLLAVITTCI 166

Query: 169 XXXXXXXXXKKYSVGSFELLSKTAPIQALSLLVTGPFIDYYLSGELLSDYAITWGAFFFI 228
                    KK+ V S +LL ++ P QA++L + GPF+D+ L+ + +  +  T     FI
Sbjct: 167 AQIMTNNIQKKFKVSSTQLLYQSCPYQAMTLFIAGPFLDWLLTKQNVFAFKYTSEVLVFI 226

Query: 229 ILSCSLAVFCNVSQYLCIGRFSAVSFQVLGHMKTVCVLILGWVLFDSQLTLKNIMGMAIA 288
           +LSC ++V  N S +L IG+ S V++QVLGH+KT  VL  G+VL     + +NI+G+ IA
Sbjct: 227 VLSCLISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIA 286

Query: 289 VAGMIIYSWAVEVEKQTKSN 308
           + GM++YS+    E Q K +
Sbjct: 287 LIGMVLYSYYCSREGQQKPS 306


>GSVIVT01025202001 assembled CDS
          Length = 348

 Score =  148 bits (374), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 103/306 (33%), Positives = 161/306 (52%), Gaps = 2/306 (0%)

Query: 1   MEEKKSSSVSDVGAWAMNVFSSIGIIMVNKQLMSSTGFAFVFATTLTGLHFSMTALVGLI 60
           M E     +  +GA  ++V SS+ I++ NK LMS+ GF F  ATTLT  H  +T     +
Sbjct: 1   MGEMSGFQLGVIGALFLSVASSVSIVICNKALMSNLGFPF--ATTLTSWHLMVTFCTLHV 58

Query: 61  SNAAGYSASKHIPMWELIWFSVVANVSITGMNLSLMLNSVGFYQISKLSMIPVVCVMEWI 120
           +       SK + M  ++ F ++  VSI  +NLSL  NS+GFYQ++KL++IP   ++E +
Sbjct: 59  AQRFNVFESKSVDMKTVMLFGILNGVSIGLLNLSLGFNSIGFYQMTKLAIIPFTVLLETL 118

Query: 121 LHGKHYSKEXXXXXXXXXXXXXXXXXXXXXXNAKGFVCACVAVXXXXXXXXXXXXXXKKY 180
              K +S++                      N  G + + +A+              K+ 
Sbjct: 119 FLKKQFSQKIKLSLFLLLVGVAIASVTDLQLNFVGTILSLLAIATTCVGQILTNTIQKRL 178

Query: 181 SVGSFELLSKTAPIQALSLLVTGPFIDYYLSGELLSDYAITWGAFFFIILSCSLAVFCNV 240
           +V S +LL ++AP QA  L V+GP +D  L+ + +  Y  +     FIILSC ++V  N 
Sbjct: 179 NVSSTQLLYQSAPFQAAILFVSGPVVDQCLTKQNVFAYKYSPIVLAFIILSCIISVSVNF 238

Query: 241 SQYLCIGRFSAVSFQVLGHMKTVCVLILGWVLFDSQLTLKNIMGMAIAVAGMIIYSWAVE 300
           S +L IG+ S V++QVLGH+KT  VL  G+ L     T +NI+G+ IA+ GM +YS+   
Sbjct: 239 STFLVIGKTSPVTYQVLGHLKTCLVLGFGYTLLHDPFTERNIIGILIAILGMGLYSYFCT 298

Query: 301 VEKQTK 306
            E + K
Sbjct: 299 HENKKK 304


>GSVIVT01029267001 assembled CDS
          Length = 382

 Score = 83.6 bits (205), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 81/302 (26%), Positives = 134/302 (44%), Gaps = 16/302 (5%)

Query: 14  AWAMNVFSSIGIIMVNKQLMSSTGFAFVFATTLTGLHFSMTALVGLISNA----AGYSAS 69
           A   N   S+GII++NK ++   GF +     LT +H++++ L+  I NA         S
Sbjct: 58  ALTFNFLVSVGIILMNKLVLGRVGFNY--PIFLTFIHYTLSWLLMAILNALSMLPAAPPS 115

Query: 70  KHIPMWELIWFSVVANVSITGMNLSLMLNSVGFYQISKLSMIPVVCVMEWILHGKHYSKE 129
           K  P   L+   +V ++S    N+SL  NSVGFYQ++K+++ P + + E+IL  K  S +
Sbjct: 116 KSTPFSSLLSLGIVMSLSNGLANVSLKYNSVGFYQMAKIAVTPTIVLAEFILFAKRVSCQ 175

Query: 130 XXXXXXXXXXXXXXXXXXXXXXNAKGFVCACVA---VXXXXXXXXXXXXXXKKYSVGSFE 186
                                 +   F  AC+A   +              ++ +  +  
Sbjct: 176 KVLALTVVSIGVAVATVTDLQFH---FFGACIALAWIIPSAVNKILWSNLQQQENWTALA 232

Query: 187 LLSKTAPIQALSLLVTGPFIDYYLSGELLSDYAITWGAFFFIILSCSLAVFCNVSQYLCI 246
           L+ KT PI    L+   P++D      +LS +         I++S  L      S  L +
Sbjct: 233 LMWKTTPITLFFLVTLMPWLD---PPGILS-FGWNLNNTLAILMSAVLGFLLQWSGALAL 288

Query: 247 GRFSAVSFQVLGHMKTVCVLILGWVLFDSQLTLKNIMGMAIAVAGMIIYSWAVEVEKQTK 306
           G  SA +  VLG  KT  +L+ G+ LF S     +I G   A+AGM +Y++   ++ Q  
Sbjct: 289 GATSATTHVVLGQFKTCVILLGGFFLFGSNPGTISICGATTALAGMSVYTYLNLLKPQQL 348

Query: 307 SN 308
            N
Sbjct: 349 PN 350


>GSVIVT01014731001 assembled CDS
          Length = 383

 Score = 74.7 bits (182), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 76/298 (25%), Positives = 122/298 (40%), Gaps = 8/298 (2%)

Query: 2   EEKKSSSVSDVGAWAMNVFSSIGIIMVNKQLMSSTGFAFVFATTLTGLHFSMTALVGLIS 61
           + ++      V A   N   ++GII+ NK ++   GF F    TL   +F+    + +  
Sbjct: 48  KRQQQRCCGPVVAMTFNFMVAVGIILANKLVLGKIGFNFPIFLTLIH-YFTAWIFMAIFK 106

Query: 62  NAAGYS---ASKHIPMWELIWFSVVANVSITGMNLSLMLNSVGFYQISKLSMIPVVCVME 118
             A       SK  P   L +   V  +S    N SL  NSVGFYQ++K+S+ P + + E
Sbjct: 107 GLALLPVSPPSKTTPFSSLFFLGAVMALSTGLANTSLKFNSVGFYQMAKISVTPTIVLAE 166

Query: 119 WILHGKHYSKEXXXXXXXXXXXXXXXXXXXXXXNAKGFVCACVAVXXXXXXXXXXXXXXK 178
           +IL  K  S +                      N  G   A + +              +
Sbjct: 167 FILLKKTVSFKKVLALSVVSIGVAIATVADLEFNMFGACIAILWIIPSAINKILWSNLQQ 226

Query: 179 KYSVGSFELLSKTAPIQALSLLVTGPFIDYYLSGELLSDYAITWGAFFFIILSCSLAVFC 238
           + +  +  L+ KT P+    LL   P++D   +   + D +        I++S  L    
Sbjct: 227 QSNWTALALMWKTTPVTIFFLLALMPWLDPPGALSFVWDVSNASA----ILISALLGFLL 282

Query: 239 NVSQYLCIGRFSAVSFQVLGHMKTVCVLILGWVLFDSQLTLKNIMGMAIAVAGMIIYS 296
             S  L +G  SA S  VLG  KT  +L+ G++LF S     +I G   A+ GM +Y+
Sbjct: 283 QWSGALALGATSATSHVVLGQFKTCVILLGGYILFKSDPGFVSICGAVAALCGMSVYT 340


>GSVIVT01016383001 assembled CDS
          Length = 231

 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 71/129 (55%), Gaps = 11/129 (8%)

Query: 182 VGSFELLSKTAPIQALSLLVTGPFIDYYLSGELLS----DYAITWGAFFFIILSCSLAVF 237
           + S  LL   API  + LL    F++  + G  L+    D  I W    +++ + +LA F
Sbjct: 110 LNSMNLLLYMAPIAVVFLLPATLFMEENVVGITLALARDDIKIVW----YLLFNSALAYF 165

Query: 238 CNVSQYLCIGRFSAVSFQVLGHMKTVCVLILGWVLFDSQLTLKNIMGMAIAVAGMIIYSW 297
            N++ +L     SA++ QVLG+ K    +++  ++F + +++  ++G ++ V G+I+YS 
Sbjct: 166 VNLTNFLVTKHTSALTLQVLGNAKGAVAVVVSILIFRNPVSVTGMLGYSLTVFGVILYS- 224

Query: 298 AVEVEKQTK 306
             E +K++K
Sbjct: 225 --EAKKRSK 231