Jatropha Genome Database

JcCB0004221.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0004221.20 + phase: 0 
         (115 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01032857001 assembled CDS                                       100   1e-22
GSVIVT01016313001 assembled CDS                                        99   5e-22
GSVIVT01019358001 assembled CDS                                        55   8e-09
GSVIVT01004833001 assembled CDS                                        55   9e-09

>GSVIVT01032857001 assembled CDS
          Length = 292

 Score =  100 bits (250), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 55/110 (50%), Positives = 62/110 (56%), Gaps = 28/110 (25%)

Query: 1   MAIKPTKAQKKTQYDQKLCRLLDEYSQILVVGADNVGSNQLQSIRRGLRGDSIVLMGKNT 60
           MA+KP+KA KK  YDQKLC+LLDEYSQIL+  ADN                         
Sbjct: 1   MAVKPSKADKKIAYDQKLCQLLDEYSQILIAAADN------------------------- 35

Query: 61  MMKRSIKLHAEKTGNDAFNSXXXXXXXXXXXXFTKGDLKEVREEIAKYKV 110
              RSI+LHAEKTGN AF +            FTKGDLKEV EE+AKYKV
Sbjct: 36  ---RSIRLHAEKTGNTAFLNLIPLLVGNVGLIFTKGDLKEVSEEVAKYKV 82


>GSVIVT01016313001 assembled CDS
          Length = 292

 Score = 98.6 bits (244), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 53/110 (48%), Positives = 62/110 (56%), Gaps = 28/110 (25%)

Query: 1   MAIKPTKAQKKTQYDQKLCRLLDEYSQILVVGADNVGSNQLQSIRRGLRGDSIVLMGKNT 60
           MA+KP+KA KK  YDQKLC+LLDEY+QIL+  ADN                         
Sbjct: 1   MAVKPSKADKKIAYDQKLCQLLDEYTQILIAAADN------------------------- 35

Query: 61  MMKRSIKLHAEKTGNDAFNSXXXXXXXXXXXXFTKGDLKEVREEIAKYKV 110
              RSI+LHAEKTGN AF +            FT+GDLKEV EE+AKYKV
Sbjct: 36  ---RSIRLHAEKTGNQAFLNLIPLLVGNVGLIFTRGDLKEVSEEVAKYKV 82


>GSVIVT01019358001 assembled CDS
          Length = 261

 Score = 54.7 bits (130), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 28/50 (56%), Positives = 32/50 (64%)

Query: 61  MMKRSIKLHAEKTGNDAFNSXXXXXXXXXXXXFTKGDLKEVREEIAKYKV 110
           M+K SI+L AEKTGN  F +            FTKGDLKEV EE+AKYKV
Sbjct: 16  MVKYSIRLRAEKTGNPVFLNLVPLLVGNVGPIFTKGDLKEVDEEVAKYKV 65


>GSVIVT01004833001 assembled CDS
          Length = 197

 Score = 54.7 bits (130), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 28/50 (56%), Positives = 31/50 (62%)

Query: 61  MMKRSIKLHAEKTGNDAFNSXXXXXXXXXXXXFTKGDLKEVREEIAKYKV 110
           M+K SI L AEKTGN  F +            FTKGDLKEV EE+AKYKV
Sbjct: 16  MVKHSIMLRAEKTGNPVFLNLVPLLVGNVGPIFTKGDLKEVDEEVAKYKV 65