Jatropha Genome Database

JcCB0004221.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0004221.10 - phase: 0 /pseudo
         (581 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01024770001 assembled CDS                                       710   0.0  
GSVIVT01032851001 assembled CDS                                       618   e-177
GSVIVT01016290001 assembled CDS                                        76   4e-14
GSVIVT01016291001 assembled CDS                                        66   6e-11

>GSVIVT01024770001 assembled CDS
          Length = 589

 Score =  710 bits (1832), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/580 (64%), Positives = 414/580 (71%), Gaps = 56/580 (9%)

Query: 24  VKFNGRVSSSISTSLALRGSASTCVRTLKCSGSISQSYADQSEKFLEASKKGNIIPLYRC 83
           V  NGR  +S S +L   G     V  L  S   S S  D S KF EA+KKGN+IPL+R 
Sbjct: 44  VSDNGRALTSGSLALVSSGRRWHAVACLSHS---SPSLVDHSAKFFEAAKKGNLIPLHRS 100

Query: 84  ILCDHLTPVLAYRCLVKEDDRDAPSFLFESVEPGLDASTIGRYSVIGAQPSVEIVAKENM 143
           I  DHLTPVLAYRCLVKEDDRDAPSFL+ESVEPG+ +S +GRYSVIGAQP++EIVAKENM
Sbjct: 101 IFSDHLTPVLAYRCLVKEDDRDAPSFLYESVEPGIQSSNVGRYSVIGAQPTIEIVAKENM 160

Query: 144 VTIMDHYEGLRTEQIVEDPMEVPRRMMEGWTPQLVDELPEVFNGGWVGYFSYDTVRYVEK 203
           VTIMDH  G RTE+IVEDPM +PRRMMEGW PQL+DELPE F GGWVGYFSYDTVRYVEK
Sbjct: 161 VTIMDHEAGSRTEEIVEDPMSIPRRMMEGWKPQLLDELPEAFCGGWVGYFSYDTVRYVEK 220

Query: 204 KKLPFSTAPPDDRNLPDVHLGLYEDVMIFDHLEKKAYVIHWVRLDQYSTVEEAFNDGINR 263
           KKLPF +AP DDRNLPDVHLGLYEDV++FDH++K+ +VIHWVRLDQYS+VEEAFNDG+NR
Sbjct: 221 KKLPFLSAPKDDRNLPDVHLGLYEDVLVFDHVKKQVFVIHWVRLDQYSSVEEAFNDGMNR 280

Query: 264 LENLISRVHDT--DTLPAGLIKLSTRLFGPKLETSSMTSEEYKAAVLHAKEHILAGDIFQ 321
           LE L+SRVHD     L AG IKL T LFGP LE S+MT +EY  AVL AKEHILAGDIFQ
Sbjct: 281 LEALVSRVHDIVPPKLAAGSIKLQTGLFGPSLEKSTMTCDEYMKAVLEAKEHILAGDIFQ 340

Query: 322 IVLSQRFERRTFADPFEIYRSLRIVNPSPYMAYLQARGCILVASSPEILSSVKK------ 375
           IVLSQRFERRTFADPFE+YR+LRIVNPSPYM YLQARGCILVASSPEIL+ VKK      
Sbjct: 341 IVLSQRFERRTFADPFEVYRALRIVNPSPYMTYLQARGCILVASSPEILTRVKKNRIINR 400

Query: 376 -----------PKEDKMLEKELLNDEKQCAEHIMLVDLGRNDVGKAVHAG---LQTWFCE 421
                      PKED MLE +L NDEKQCAEHIMLVDLGRNDVGK    G   ++     
Sbjct: 401 PLAGTVRRGKTPKEDIMLENQLRNDEKQCAEHIMLVDLGRNDVGKVSKPGSVTVEKLMNI 460

Query: 422 SRKAHGYRAIFSCYAHQLNSHWRVTXSFNXLGCIAXXXXXXXXXXGTEVCWMQVKAMELI 481
            R +H    I S    +L  H             +          GT     +VKAMELI
Sbjct: 461 ERYSHVMH-ISSTVTGELLDH-----------LTSWDALRAALPVGTVSGAPKVKAMELI 508

Query: 482 DQLEVTRRGPYXXXXXXXXXXXDMDVALALRTMVFPTSFRYDTMFSYNDMNKRREWVAHL 541
           DQLEVTRRGPY           DMD+ALALRT+                   RREWVAHL
Sbjct: 509 DQLEVTRRGPYSGGFGGISFSGDMDIALALRTI-------------------RREWVAHL 549

Query: 542 QAGAGIVADSDPADEQRECENKAAGLARAIDLAEESFLKK 581
           QAGAGIVADS PADEQRECENKAA LARAIDLAE SF++K
Sbjct: 550 QAGAGIVADSVPADEQRECENKAAALARAIDLAESSFIEK 589


>GSVIVT01032851001 assembled CDS
          Length = 590

 Score =  618 bits (1593), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 330/585 (56%), Positives = 396/585 (67%), Gaps = 49/585 (8%)

Query: 26  FNGRVSSSISTSLALRGSAST-CVRTLKCSGSISQSYA--DQSEKFLEASKKGNIIPLYR 82
           F+ R+S  +   ++ R S S  C R  KC    + S    D   KF EAS+ GNI+PL+ 
Sbjct: 13  FSDRISHVLLAGVSTRSSVSVPCQRAFKCLSLAAPSLGIDDNPVKFKEASRNGNIVPLHA 72

Query: 83  CILCDHLTPVLAYRCLVKEDDRDAPSFLFESVEPGLDASTIGRYSVIGAQPSVEIVAKEN 142
           CI  D LTP+LAYRCLVKE D +APSF+FESV PG   S++GRYSV+GAQP +EIVAKEN
Sbjct: 73  CIFSDQLTPILAYRCLVKEGDLEAPSFVFESVVPGSQDSSVGRYSVVGAQPCMEIVAKEN 132

Query: 143 MVTIMDHYEGLRTEQIVEDPMEVPRRMMEGWTPQLVDELPEVFNGGWVGYFSYDTVRYVE 202
            V  MDH EGLRTE++VEDPM +PRR+ EGW PQL+DELP+ F GGWVG+FSYDTV YVE
Sbjct: 133 KVITMDHEEGLRTEELVEDPMVIPRRIAEGWKPQLLDELPDTFCGGWVGFFSYDTVCYVE 192

Query: 203 KKKLPFSTAPPDDRNLPDVHLGLYEDVMIFDHLEKKAYVIHWVRLDQYSTVEEAFNDGIN 262
           KKKLPFS A  DDRNL D+HL LY+DV++FDH+EKK +VIHWVRLD +S+VE+A+ DG+ 
Sbjct: 193 KKKLPFSKAQDDDRNLADIHLALYDDVIVFDHVEKKVHVIHWVRLDLHSSVEKAYVDGMK 252

Query: 263 RLENLISRVHDTD--TLPAGLIKLSTRLFGPKLETSSMTSEEYKAAVLHAKEHILAGDIF 320
           RLE L+SRV D D   L  G ++   + F   L  S+MTSE YK     AKEHI AGDIF
Sbjct: 253 RLEILLSRVQDIDPPKLSPGCVESHIQSFSSSLNESNMTSEAYK----KAKEHIRAGDIF 308

Query: 321 QIVLSQRFERRTFADPFEIYRSLRIVNPSPYMAYLQARGCILVASSPEILSSVKKPK--- 377
           QI LSQ FERRTFADPFE+YR+ R+VNPSP+MAYLQARGC+LVASSPEIL+ VKK     
Sbjct: 309 QIGLSQCFERRTFADPFEVYRAFRVVNPSPFMAYLQARGCVLVASSPEILTHVKKNNIVN 368

Query: 378 --------------EDKMLEKELLNDEKQCAEHIMLVDLGRNDVGKAVHAGLQTWFCESR 423
                         ED+MLE +LLNDEKQCAEHIMLVDLGRN+VGK    G       S 
Sbjct: 369 RPLAGTVRRGTTIHEDEMLEGQLLNDEKQCAEHIMLVDLGRNNVGKVAKFG-------SL 421

Query: 424 KAHGYRAIFSCYAHQLNSHWRVT-------XSFNXLGCIAXXXXXXXXXXGTEVCWMQVK 476
           K    +A+  C++H ++    VT        S+N L  I           G      +VK
Sbjct: 422 KVEDLKAV-ECFSHVMHISSTVTGELQDHLTSWNALRSI--------LHVGAVSGAPKVK 472

Query: 477 AMELIDQLEVTRRGPYXXXXXXXXXXXDMDVALALRTMVFPTSFRYDTMFSYNDMNKRRE 536
           AMELID+ E +RRGPY           DM++ L LRT+VFPT  RYDT+FSY D   RRE
Sbjct: 473 AMELIDEWEESRRGPYGGGFGNVSFTGDMEIDLTLRTIVFPTGNRYDTLFSYKDTKLRRE 532

Query: 537 WVAHLQAGAGIVADSDPADEQRECENKAAGLARAIDLAEESFLKK 581
           WVA+ QAGAGIVADS   D+QR+CE KAA LA AIDLAE +F  K
Sbjct: 533 WVAYFQAGAGIVADSVVDDKQRDCEGKAAALACAIDLAEAAFYNK 577


>GSVIVT01016290001 assembled CDS
          Length = 827

 Score = 76.3 bits (186), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 100/418 (23%), Positives = 169/418 (40%), Gaps = 94/418 (22%)

Query: 181 LPEVFNGGWVGYFSYDTVRYVEKKKLPFSTAPPDDRN---LPDVHLGLYEDVMIFDHLEK 237
           LP  F+GG+VGY  YD         L        +R+    PD      +++++ DH   
Sbjct: 431 LPFAFHGGYVGYLGYD---------LKVECGAAFNRHKSKTPDACFFFADNIVVIDHHYD 481

Query: 238 KAYVIHWVRLDQYSTVEEAFNDGINRLENLISRVHDTDTLPAGLIKLSTRLFGPK----L 293
             Y++    L + ST   A+   ++  E  +  +  +DT  + +    T    P     L
Sbjct: 482 DVYIL---SLHEGSTATPAW---LDETEKRLLGLKASDTNKSEVSMSLTATLSPSEAGFL 535

Query: 294 ETSSMTSEEYKAAVLHAKEHILAGDIFQIVLSQRFERRTF-ADPFEIYRSLRIVNPSPYM 352
              SM  E+Y   V    + I  G+ +++ L+ +  +R    D  + Y  LR  NP+P+ 
Sbjct: 536 ADKSM--EQYMKDVKQCLQFIKDGESYELCLTSQLRKRIGEMDLLDFYLHLREKNPAPFA 593

Query: 353 AYL---QARGCILVASSPE---------------ILSSVKK---PKEDKMLEKELLNDEK 391
           A+L   + + CI  +SSPE               I  +V +    + D+ L+++L   EK
Sbjct: 594 AWLNFPKEKLCI-CSSSPERFLKLDENGMLEAKPIKGTVPRGSAKEADEQLKQKLQCSEK 652

Query: 392 QCAEHIMLVDLGRNDVGKAVHAGLQTWFCESRKAH--------GYRAIFSCYAHQLNSHW 443
             AE++M+VDL RN++G+          CE    H         Y  +     H + S  
Sbjct: 653 DQAENLMIVDLLRNNLGRV---------CEVGSVHVPLLMDVESYTTV-----HTMVSTI 698

Query: 444 RVT--XSFNXLGCIAXXXXXXXXXXGTEVCWMQVKAMELIDQLEVTRRGPYXXXXXXXXX 501
           R     + + + C+           G+     ++++MEL+D +E + RG Y         
Sbjct: 699 RGKKDSTMSPVDCV-----RAAFPGGSMTGAPKLRSMELLDSIESSSRGIYSGSIGFFSY 753

Query: 502 XXDMDVALALRTMVFPTSFRYDTMFSYNDMNKRREWVAHLQAGAGIVADSDPADEQRE 559
               D+ + +RT+V                    E  A + AG  I+A SDPA E  E
Sbjct: 754 NQTFDLNIVIRTVVI------------------HEGEASVGAGGAIIALSDPAGEHEE 793


>GSVIVT01016291001 assembled CDS
          Length = 853

 Score = 65.9 bits (159), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 97/415 (23%), Positives = 159/415 (38%), Gaps = 88/415 (21%)

Query: 181 LPEVFNGGWVGYFSYDTVRYVEKKKLPFSTAPPDDRN-LPDVHLGLYEDVMIFDHLEKKA 239
           LP  F+GG+VGY  Y+        K+    A    ++  PD      ++V++ DH     
Sbjct: 466 LPFNFHGGYVGYIGYNL-------KVECGMASNHHKSSTPDACFFFADNVIVIDHHYDDV 518

Query: 240 YVIHWVRLDQYSTVEEAFNDGINRLENLISRVHDTDTLPAGLIKLSTRLF---GPKLETS 296
           Y++    L +  T    + D             DT+    GL   + + F    P+  T 
Sbjct: 519 YIM---SLHEGQTATTQWLD-------------DTEQKLLGLKASAAKKFKVESPQPVTH 562

Query: 297 S---------MTSEEYKAAVLHAKEHILAGDIFQIVLSQRFERRTFA-DPFEIYRSLRIV 346
           S          + E+Y   V    + I  G+ +++ L+ +  +R    D   +Y +LR  
Sbjct: 563 SPSKAGFFAEKSREQYMKDVEKCLKLIKDGESYELCLTTQMRKRIGQIDYLGLYLNLREK 622

Query: 347 NPSPYMAYLQ--ARGCILVASSPEILSSV-------KKP-----------KEDKMLEKEL 386
           NP+PY A+L        +  SSPE    +        KP           +ED+ L+ +L
Sbjct: 623 NPAPYAAWLNFSKENLCICCSSPERFLQLDGNGILEAKPIKGTIARGLTKEEDEHLKLQL 682

Query: 387 LNDEKQCAEHIMLVDLGRNDVGKAVHAGLQTWFCESRKAHGYRAIFSCYAHQLNSHWR-- 444
              EK  AE++M+VDL RND+G+    G     C       Y  +     H + S  R  
Sbjct: 683 QYSEKDQAENLMIVDLLRNDLGRVCEPGSIHVPC-LMDVESYATV-----HTMVSTIRGK 736

Query: 445 VTXSFNXLGCIAXXXXXXXXXXGTEVCWMQVKAMELIDQLEVTRRGPYXXXXXXXXXXXD 504
                + + C+           G+     ++++MEL+D +E + RG Y            
Sbjct: 737 KQSKMSPVDCV-----RAAFPGGSMTGAPKLRSMELLDSIETSSRGIYSGSIGFFSYNQT 791

Query: 505 MDVALALRTMVFPTSFRYDTMFSYNDMNKRREWVAHLQAGAGIVADSDPADEQRE 559
            D+ + +RT+V                    E  A +  G  IVA S+P  E  E
Sbjct: 792 FDLNIVIRTIVI------------------HEGEASVGGGGAIVALSNPESEYEE 828