Jatropha Genome Database

JcCB0004021.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0004021.20 - phase: 0 
         (204 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01031686001 assembled CDS                                       293   5e-80
GSVIVT01028826001 assembled CDS                                       145   1e-35
GSVIVT01021319001 assembled CDS                                       137   3e-33

>GSVIVT01031686001 assembled CDS
          Length = 296

 Score =  293 bits (749), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 135/179 (75%), Positives = 157/179 (87%)

Query: 1   MNMFLNLKDSKEAVYGALDAWVAWERQFPIGSIRRALLTLEKEQQWHRVVQVIKWMLSKG 60
           +   L+LKDSKEAVYGALDAWVAWE+ FPI S++R L+TLEKEQQWHRV+QV+KWMLSKG
Sbjct: 88  VTTLLDLKDSKEAVYGALDAWVAWEQNFPIASLKRVLITLEKEQQWHRVIQVVKWMLSKG 147

Query: 61  QGNTMGTYGQLIRALDMDHRADEAHLFWSKKIGTDLHSVPWELCKLMLSIYYRNNMLECL 120
           QG TMGTYGQLIRALDMDHRA+EAH FW KKIGTDLHSVPW LC  M+S+YYRNNMLE L
Sbjct: 148 QGTTMGTYGQLIRALDMDHRAEEAHEFWVKKIGTDLHSVPWHLCHRMISVYYRNNMLENL 207

Query: 121 VKLFKGLEAFDRKPPEKSIVQKVANAYEMLGMLEEKDRVEQKYIHLFSETHKGDNKKFR 179
           VKLFKGLEAFDRKP +K +V+KVA+AYEMLG+LEEK+R+ +KY +LF+ET  G  KK +
Sbjct: 208 VKLFKGLEAFDRKPQDKLVVKKVADAYEMLGLLEEKERIFEKYDYLFTETVAGKPKKSK 266


>GSVIVT01028826001 assembled CDS
          Length = 295

 Score =  145 bits (366), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 70/157 (44%), Positives = 108/157 (68%), Gaps = 1/157 (0%)

Query: 7   LKDSKEAVYGALDAWVAWERQFPIGSIRRALLTLEKEQQWHRVVQVIKWMLSKGQGNTMG 66
           L + KE VYGALD+++AWE +FP+ ++++AL TLE +++W R++QV KWMLSKGQG TMG
Sbjct: 65  LSNVKEEVYGALDSFIAWELEFPLITVKKALKTLEDQKEWKRIIQVTKWMLSKGQGRTMG 124

Query: 67  TYGQLIRALDMDHRADEAHLFWSKKIGTDLHSVPWELCKLMLSIYYRNNMLECLVKLFKG 126
           +Y  L+ AL  D R DEA   W+K    +L S+P      M+SIYYR +M E + ++F  
Sbjct: 125 SYFTLLNALAEDGRLDEAEELWTKLFSENLESLPRVFYDKMISIYYRRDMHEKMFEIFAD 184

Query: 127 LEAFDRKPPEKSIVQKVANAYEMLGMLEEKDRVEQKY 163
           +E    + P  SIV+ V + ++ LGML++ +++++KY
Sbjct: 185 MEELGIR-PNTSIVKMVGDVFQKLGMLDKYEKLQKKY 220


>GSVIVT01021319001 assembled CDS
          Length = 277

 Score =  137 bits (345), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 71/157 (45%), Positives = 101/157 (64%), Gaps = 1/157 (0%)

Query: 7   LKDSKEAVYGALDAWVAWERQFPIGSIRRALLTLEKEQQWHRVVQVIKWMLSKGQGNTMG 66
           L + KEAVYGALD W AWE +FP+ +  +AL  L K  QW RV+QV KWMLSKGQG TMG
Sbjct: 97  LPNEKEAVYGALDKWTAWETEFPLIAAAKALRILRKRNQWKRVIQVAKWMLSKGQGATMG 156

Query: 67  TYGQLIRALDMDHRADEAHLFWSKKIGTDLHSVPWELCKLMLSIYYRNNMLECLVKLFKG 126
           TY  L+ A DMD R DEA   W+  + T   S+  +L   M+S+Y  ++M + ++++F  
Sbjct: 157 TYDTLLLAFDMDWRVDEAESLWNMILHTHTRSISKQLFSRMISLYDHHDMRDKVIEVFAD 216

Query: 127 LEAFDRKPPEKSIVQKVANAYEMLGMLEEKDRVEQKY 163
           +E    KP E + V++VA A++ LG  +++  V +KY
Sbjct: 217 MEELGVKPDEDT-VRRVACAFQTLGQEDKQKLVLKKY 252