Jatropha Genome Database

JcCB0003651.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0003651.10 + phase: 0 /partial
         (573 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01004789001 assembled CDS                                       260   1e-69
GSVIVT01001285001 assembled CDS                                       131   1e-30
GSVIVT01011481001 assembled CDS                                        52   6e-07

>GSVIVT01004789001 assembled CDS
          Length = 648

 Score =  260 bits (665), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 200/532 (37%), Positives = 280/532 (52%), Gaps = 47/532 (8%)

Query: 9   QEVFKDCEDAYYKLQHRSLDLQLSADEFINNGEENIPMKGNVQNSLEGPVDFKLPILGDN 68
           Q V  + +  +  LQ R  DLQL AD++I++ + ++P KG   +SL+  +  K   LG+N
Sbjct: 90  QGVCSELQPRHSSLQKRPFDLQLPADQYISSIDMDLPEKGKSWDSLKESLGDKSSFLGNN 149

Query: 69  SPNAEELKLSLSTGVDNRTVGHTTRTCFTKKSFSCSQNVIDLEELKERILDRYVKCPPPL 128
             N E LKLSL  G D    G  +R  +++K+FSC+Q VIDLEE  E+  D   +   PL
Sbjct: 150 VSNPEFLKLSLCIGEDTSKKGGGSRNRYSEKTFSCAQYVIDLEESTEKGSDEDTQTVSPL 209

Query: 129 GRACLEVHSKGKHDSQTSDFPGPDISISIKKDLSHEIAESSSIQEYSECYQEQTFSNEGN 188
             A L   S  KH+ Q S       S S KKD       S SI + SE YQEQT  ++G 
Sbjct: 210 IFAGLTPSSGDKHELQASVLSNLATSKSGKKDPEDGTMMSCSIVDGSESYQEQTCFHQGL 269

Query: 189 RECHDDVPSNDHFTEMQQFTLYRGQQFDLNKVHLXXXXXXXXXHMLVYPSTASSKGNSHG 248
            E + DV SN+ FT+ QQFT Y   Q DLN++            ++ YPSTASS G  HG
Sbjct: 270 NESYGDVRSNNLFTKKQQFTSYVAGQMDLNRIQFEDSSCYSNDVVVPYPSTASSSGILHG 329

Query: 249 LAGSMHDGTCPTAFQGNKVNQFSNGVSAMLKQDNIVNLALANSNRENKSADNW---TRNT 305
           L G   +G CPT     K N  S      L +++     L +SN ++ S +      ++ 
Sbjct: 330 LDGQFEEGGCPTMTCWRKPNADS------LNENSDTLPTLTDSNNKSNSTEILPISAKSN 383

Query: 306 GIISSP------ESIIRTAVDISEDLG-CCSGHKNGID---ELKSKLAREVSSEKSEIEN 355
           G   S       ES+   A+D+ ED G CCS  +N +D   E  + L  +        E+
Sbjct: 384 GSNGSELCPIDLESVSGPALDLCEDPGRCCSSTQNEVDLPLEPPTGLLHDG-------ED 436

Query: 356 ALFSCNDQSQNTCQDGHGNKSPSSCKSYCISDNDSSSAKTKYSGITSG---------VLK 406
            +FS   +S +T QDG+       CKS CI+DN+SSS KT  S +  G         + K
Sbjct: 437 TVFSFPYRSHSTVQDGN-------CKSDCIADNNSSSIKTMLSRVELGGSNLSTFDELPK 489

Query: 407 TQLGSQVGDVISGEHDQKTCDGIDIKNDCYTKKEESANVDVLIKEAAEMLIQISAKCSAS 466
           +Q+ SQV +    E D       + K+ C+TKK+E ++V+ L+++AAE LI IS + SA 
Sbjct: 490 SQIWSQVAETPFSEQDSS-----ESKHQCHTKKDEESDVNALVQKAAESLIHISLESSAC 544

Query: 467 HQYLYAKVGSKQMEDDKREQTQCSCDSFELMTLNLTESNLDDNSVSSKPIEV 518
           +Q  +   GS + E+DKREQ Q S DSFE +TL L ES+ DD SVSS P E+
Sbjct: 545 YQECFTNKGSHERENDKREQPQYSSDSFESITLKLMESSADDYSVSSMPFEI 596


>GSVIVT01001285001 assembled CDS
          Length = 309

 Score =  131 bits (329), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 114/321 (35%), Positives = 164/321 (51%), Gaps = 43/321 (13%)

Query: 168 SSSIQEYSECYQEQTFSNEGNRECHDDVPSNDHFTEMQQFTLYRGQQFDLNKVHLXXXXX 227
           S SI + SE YQEQT  ++G  E + DV SN+  T+ QQFT Y   Q DLN++       
Sbjct: 2   SCSIVDGSESYQEQTCFHQGLNESYGDVRSNNLLTKKQQFTSYVAGQMDLNRIQFEDSSC 61

Query: 228 XXXXHMLVYPSTASSKGNSHGLAGSMHDGTCPTAF-----QGNKVNQFSNGVSAMLKQDN 282
                ++ YPSTASS G  HGL G   +G CPT        G+ +N+ S+ +  +   +N
Sbjct: 62  YSNDVVVPYPSTASSSGILHGLDGQFEEGACPTMTCWRKPNGDSLNENSDTLPTLTDSNN 121

Query: 283 IVNLA--LANSNRENKSADNWTRNTGIISSPESIIRTAVDISEDLG-CCSGHKNGID--- 336
             N    L  S + N S  N +    I    ES+   A+D+SED G C S  +N +D   
Sbjct: 122 KSNSTEILPISAKSNGS--NGSELCPI--DLESVSGPALDLSEDPGRCSSNTQNEVDLPL 177

Query: 337 ELKSKLAREVSSEKSEIENALFSCNDQSQNTCQDGHGNKSPSSCKSYCISDNDSSSAKTK 396
           E  + L  +        E+ +FS   +S +T QDG+       CKS CI+DN+SSS KT 
Sbjct: 178 EPPTGLLHDG-------EDTVFSFPYRSHSTVQDGN-------CKSDCIADNNSSSIKTM 223

Query: 397 YSGITSG---------VLKTQLGSQVGDVISGEHDQKTCDGIDIKNDCYTKKEESANVDV 447
            S +  G         + K+Q+GSQV +    E D       + K+  +TKK+E ++V+ 
Sbjct: 224 LSRVELGDSNLSTLDELSKSQIGSQVAETPFSELDSS-----ESKHQYHTKKDEESDVNA 278

Query: 448 LIKEAAEMLIQISAKCSASHQ 468
           L+++AAE LI IS   SA +Q
Sbjct: 279 LVQKAAESLIHISLGSSACYQ 299


>GSVIVT01011481001 assembled CDS
          Length = 205

 Score = 52.4 bits (124), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 29/83 (34%), Positives = 46/83 (55%), Gaps = 6/83 (7%)

Query: 492 DSFELMTLNLTESNLDDNSVSSKPIEVDD------IETXXXXXXXXXXXXXXXXQKEILP 545
           D FE MTLNLTE+ ++++    +P  ++D      +                  Q++ILP
Sbjct: 41  DYFEFMTLNLTETEVEEHHCEPQPQALEDQKDDEKMLRRPRKGQARRGRQRKDFQRDILP 100

Query: 546 SLASLSRHEILEDINIMEGVLRS 568
           SLASLSR+EI EDI+ +E + ++
Sbjct: 101 SLASLSRYEITEDIHTIEELFKA 123