Jatropha Genome Database

JcCB0003511.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0003511.10 - phase: 0 
         (277 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01012225001 assembled CDS                                       120   6e-28

>GSVIVT01012225001 assembled CDS
          Length = 353

 Score =  120 bits (301), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 67/122 (54%), Positives = 78/122 (63%), Gaps = 2/122 (1%)

Query: 27  INRYPRDLLQRFMSTETQQQKTPS--SXXXXXXXXXLNLGLSLGGRFGVDKSAKKLTRSS 84
           + + PRDLLQR M    +Q +  S            LNLGLSLGGRFGVDKS KKL RSS
Sbjct: 1   MEKNPRDLLQRLMGNSGEQSQYASMVKGEDDPEEIELNLGLSLGGRFGVDKSEKKLMRSS 60

Query: 85  SIAGSIPLAREHDAFNTPPLSYPVLMRTSSLPXXXXXXXXXXXXMQSLRRLEAKRRRSEK 144
           SIAGSI + R+ DA  TP +SY  LMRTSSLP            +Q+LRR+EAKRRRSEK
Sbjct: 61  SIAGSIGITRDEDALVTPAVSYSSLMRTSSLPTETQEEWRKRKELQTLRRMEAKRRRSEK 120

Query: 145 QK 146
           Q+
Sbjct: 121 QR 122