Jatropha Genome Database
- JcCB0003421.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0003421.10 - phase: 2 /partial
(267 letters)
Database: grape_pep_20100319
26,346 sequences; 9,959,944 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
GSVIVT01025526001 assembled CDS 394 e-110
GSVIVT01033711001 assembled CDS 283 5e-77
GSVIVT01031451001 assembled CDS 256 6e-69
GSVIVT01031453001 assembled CDS 131 3e-31
GSVIVT01024715001 assembled CDS 115 2e-26
GSVIVT01014219001 assembled CDS 100 1e-21
GSVIVT01031452001 assembled CDS 99 3e-21
GSVIVT01024716001 assembled CDS 98 4e-21
GSVIVT01017972001 assembled CDS 94 9e-20
GSVIVT01001168001 assembled CDS 92 2e-19
GSVIVT01004792001 assembled CDS 49 2e-06
>GSVIVT01025526001 assembled CDS
Length = 841
Score = 394 bits (1011), Expect = e-110, Method: Compositional matrix adjust.
Identities = 186/267 (69%), Positives = 219/267 (82%), Gaps = 1/267 (0%)
Query: 1 AHDFSTDIFDDRTVILCDQCEREFHVGCLRDSGRCDLKEIPKDNWFCSNDCHRIFAALQD 60
AHDFS FDDRTV+LCDQCE+EFHVGCLRDSG CDLKE+PKD WFC +DC R+ ALQ+
Sbjct: 576 AHDFSVSKFDDRTVMLCDQCEKEFHVGCLRDSGLCDLKELPKDKWFCCDDCSRVHVALQN 635
Query: 61 FVSSGIQMIPSLQLDIITRKHAEKGLLMDGLSNDVQWRILMGKSRRKEDLSLLSATAAIF 120
S G +MIP+ +I RK+ EKGL+ DG ++D+QW IL GKS KE L LLS T AIF
Sbjct: 636 LASRGPEMIPASVSSMINRKNLEKGLI-DGAADDIQWCILSGKSCYKEHLPLLSRTTAIF 694
Query: 121 RECFDPIVAKTGRDLIPVMVYGRNISGQEFGGMYCVLLLVKNVVVSAGLLRIFGREAAEL 180
RECFDPIVA +GRDLIPVMVYGRNISGQEFGGMYCV+LL K+ VVSAGL+R+FG+E AEL
Sbjct: 695 RECFDPIVASSGRDLIPVMVYGRNISGQEFGGMYCVVLLAKSTVVSAGLIRVFGQEVAEL 754
Query: 181 PLVATSREHQGKGYFQALFSCIERLLCSXXXXXXXXPAAEEAESIWTRRFGFRKMSEGQL 240
P+VATS+EHQGKG+F+ALFSCIE LL S PAAEEAE+IWT + GF+KMSE ++
Sbjct: 755 PIVATSKEHQGKGFFRALFSCIEELLSSLGVKTLVLPAAEEAEAIWTNKLGFQKMSEERM 814
Query: 241 SKYTRELQVTIFKGTTMLEKEVPQIID 267
KYTRELQ+TIFKGT+MLEKEVP I++
Sbjct: 815 LKYTRELQLTIFKGTSMLEKEVPCIVE 841
>GSVIVT01033711001 assembled CDS
Length = 879
Score = 283 bits (724), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 143/266 (53%), Positives = 182/266 (68%), Gaps = 3/266 (1%)
Query: 1 AHDFSTDIFDDRTVILCDQCEREFHVGCLRDSGRCDLKEIPKDNWFCSNDCHRIFAALQD 60
+DFS F RT+ILCDQCE+EFH+GCLRD DLKE+P WFC +C RI +ALQ
Sbjct: 607 GYDFSKSGFGPRTIILCDQCEKEFHIGCLRDHKMQDLKELPSGKWFCCLECIRIHSALQK 666
Query: 61 FVSSGIQMIPSLQLDIITRKHAEKGLLMDGLSNDVQWRILMGKSRRKEDLSLLSATAAIF 120
G + +P L++I KH KGL N V+WR+L GK E LLS AIF
Sbjct: 667 LHVRGEEKLPDSLLNVIKEKHERKGLESIADYN-VRWRLLSGKLASPETRVLLSEAVAIF 725
Query: 121 RECFDPIV-AKTGRDLIPVMVYGRNISGQEFGGMYCVLLLVKNVVVSAGLLRIFGREAAE 179
+ FDPI+ + TGRDLIP MVYGRN+ GQ+F G+YC ++ V + VVSAG+LR+FG+E AE
Sbjct: 726 HDRFDPIIDSVTGRDLIPAMVYGRNVRGQDFSGLYCAVITVNSHVVSAGILRVFGQEVAE 785
Query: 180 LPLVATSREHQGKGYFQALFSCIERLLCSXXXXXXXXPAAEEAESIWTRRFGFRKMSEGQ 239
LPLVATS ++QG+GYFQ LFSCIE+LL PAAEEAE IWT++FGF+K++ Q
Sbjct: 786 LPLVATSVDNQGRGYFQILFSCIEKLLAFLNVRSFVLPAAEEAECIWTKKFGFKKITPDQ 845
Query: 240 LSKYTREL-QVTIFKGTTMLEKEVPQ 264
LS+Y + Q+ F+GT MLEK VP+
Sbjct: 846 LSEYRKSFYQMISFQGTCMLEKGVPE 871
>GSVIVT01031451001 assembled CDS
Length = 824
Score = 256 bits (655), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 129/264 (48%), Positives = 169/264 (64%), Gaps = 2/264 (0%)
Query: 2 HDFSTDIFDDRTVILCDQCEREFHVGCLRDSGRCDLKEIPKDNWFCSNDCHRIFAALQDF 61
H+FS F RTV+LCDQCE+EFHVGCLR+ DLKE+PK WFC +DC RI ++LQ
Sbjct: 562 HEFSRSGFGPRTVMLCDQCEKEFHVGCLREHDMDDLKEVPKGKWFCCHDCKRINSSLQKL 621
Query: 62 VSSGIQMIPSLQLDIITRKHAEKGLLMDGLSNDVQWRILMGKSRRK-EDLSLLSATAAIF 120
V G + +P L I K+ G D++WR++ G+ E SLLS +IF
Sbjct: 622 VVHGEEELPHNVLTTIKEKYGRNGSACS-KDPDIKWRLICGRRASSIEAGSLLSQALSIF 680
Query: 121 RECFDPIVAKTGRDLIPVMVYGRNISGQEFGGMYCVLLLVKNVVVSAGLLRIFGREAAEL 180
E FDPI GRDL+P MV+G++ +FGGMYC +L + + VVSA RIFG+E AEL
Sbjct: 681 HEQFDPIADAAGRDLLPDMVHGKSTREWDFGGMYCAILTISSQVVSAAAFRIFGKEVAEL 740
Query: 181 PLVATSREHQGKGYFQALFSCIERLLCSXXXXXXXXPAAEEAESIWTRRFGFRKMSEGQL 240
PLVAT + QG+GYFQ LFSC+E LL PAAE AESIWT +FGF K+++ Q
Sbjct: 741 PLVATRSDCQGQGYFQTLFSCLEGLLGVLEVRSLVLPAAEGAESIWTNKFGFNKVTQEQR 800
Query: 241 SKYTRELQVTIFKGTTMLEKEVPQ 264
+ + R+ Q+ F+GT ML+K VP+
Sbjct: 801 NNFRRDYQMVTFQGTLMLQKLVPR 824
>GSVIVT01031453001 assembled CDS
Length = 150
Score = 131 bits (330), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 62/116 (53%), Positives = 80/116 (68%)
Query: 149 EFGGMYCVLLLVKNVVVSAGLLRIFGREAAELPLVATSREHQGKGYFQALFSCIERLLCS 208
EFGGMYC +L V VVSA R+ G+E AELPLVAT + QG+GYFQAL++CIERLLC
Sbjct: 17 EFGGMYCAILTVGCQVVSAATFRVLGKEVAELPLVATRSDCQGQGYFQALYTCIERLLCF 76
Query: 209 XXXXXXXXPAAEEAESIWTRRFGFRKMSEGQLSKYTRELQVTIFKGTTMLEKEVPQ 264
PAAE AES+W +F F KM + +L+ R+ Q+ F+GT+ML+K VP+
Sbjct: 77 LQVNSLVLPAAEGAESLWINKFKFHKMEQEELNHLCRDFQMMTFQGTSMLQKPVPE 132
>GSVIVT01024715001 assembled CDS
Length = 994
Score = 115 bits (289), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 73/258 (28%), Positives = 119/258 (46%), Gaps = 14/258 (5%)
Query: 11 DRTVILCDQCEREFHVGCLRDSGRCDLKEIPKDNWFCSNDCHRIFAALQDFVSSGIQMIP 70
D V C QCER++HVGCLR G L P WFCS C +IF LQ + +
Sbjct: 725 DNVVFSCYQCERQYHVGCLRKWGHVKLASYPNGTWFCSKQCKKIFLGLQKLLGKSFPVGV 784
Query: 71 SLQLDIITRKHAEKGLLMDGLSNDVQWRILMGKSRRKEDLSLLSATAAIFRECFDPIV-A 129
+ + KGL +D L E S L+ + ECF+P+
Sbjct: 785 DNLTWTLLKPIRSKGLEID----------LPDIEALTEVYSKLNIALGVMHECFEPVKEP 834
Query: 130 KTGRDLIPVMVY--GRNISGQEFGGMYCVLLLVKNVVVSAGLLRIFGREAAELPLVATSR 187
T RD++ +++ G +++ F G Y VLL + ++S +R++G + AE+PL+ T
Sbjct: 835 HTRRDVVEDVIFCRGSDLNRLNFQGFYTVLLERNDELISVATVRVYGEKVAEVPLIGTRF 894
Query: 188 EHQGKGYFQALFSCIERLLCSXXXXXXXXPAAEEAESIWTRRFGFRKMSEGQLSKYTREL 247
+++ G L + +E+ L PA + WT FGF KM++ + ++ +
Sbjct: 895 QYRRLGMCHILMNELEKKLMELGVERLVLPAVPSVLNTWTTSFGFSKMTDSERLRFL-DY 953
Query: 248 QVTIFKGTTMLEKEVPQI 265
F+ T M +K + +I
Sbjct: 954 SFLDFQDTVMCQKLLMKI 971
>GSVIVT01014219001 assembled CDS
Length = 1300
Score = 100 bits (248), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 70/252 (27%), Positives = 122/252 (48%), Gaps = 24/252 (9%)
Query: 17 CDQCEREFHVGCLRDSGRCDLKEIPKDNWFCSNDCHRIFAALQDFVSSGIQMIPSLQLDI 76
C QCE ++H+ CL++ +C +KE+ D FC +C I++ LQ L
Sbjct: 935 CSQCEHKYHMPCLKE--KC-VKEVGGDARFCGENCQEIYSGLQGL------------LGF 979
Query: 77 ITRKHAEKGL---LMDGLSNDVQWRILMGKSRRKEDLSLLSATAAIFRECFDPIV-AKTG 132
+ H G L+ + +D + + + E S L+ I ECF +V +TG
Sbjct: 980 VN--HIADGFTWTLLRCIHDDQKVHSSQKLALKAECNSKLAVALTIMEECFLSMVDPRTG 1037
Query: 133 RDLIPVMVYGR--NISGQEFGGMYCVLLLVKNVVVSAGLLRIFGREAAELPLVATSREHQ 190
D+IP ++Y R + + F G Y V+L + +VS +R+ G AE+PL+AT + +
Sbjct: 1038 IDMIPHVLYNRGSDFARLNFNGFYTVVLEKDDALVSVASIRVHGVTVAEMPLIATYEKFR 1097
Query: 191 GKGYFQALFSCIERLLCSXXXXXXXXPAAEEAESIWTRRFGFRKMSEGQLSKYTRELQVT 250
KG + L + IE++L S A WT FGF+ + + + + +++ +
Sbjct: 1098 SKGMCRLLMNAIEKMLKSVKVEKIVVAAIPSLVETWTLGFGFKPVEDDEKASL-KKINLM 1156
Query: 251 IFKGTTMLEKEV 262
+F GT +L+K +
Sbjct: 1157 VFPGTILLKKSL 1168
>GSVIVT01031452001 assembled CDS
Length = 772
Score = 98.6 bits (244), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 50/120 (41%), Positives = 73/120 (60%), Gaps = 2/120 (1%)
Query: 2 HDFSTDIFDDRTVILCDQCEREFHVGCLRDSGRCDLKEIPKDNWFCSNDCHRIFAALQDF 61
H+FST F TV++CDQCE+EFHVGCL+ DLK +PK WFC DC I ++L+
Sbjct: 649 HEFSTSGFGPHTVMICDQCEKEFHVGCLKAHNIDDLKVVPKGKWFCCRDCKDINSSLRKI 708
Query: 62 VSSGIQMIPSLQLDIITRKHAEKGLLMDGLSNDVQWRILMG-KSRRKEDLSLLSATAAIF 120
V + +P L II +++ KG + G + D++WR+L G ++ E SLLS ++F
Sbjct: 709 VVRQEEELPDDVLRIIKKRYGRKGSVCSG-NPDIKWRLLHGRRASATEAGSLLSQALSLF 767
>GSVIVT01024716001 assembled CDS
Length = 687
Score = 97.8 bits (242), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 74/254 (29%), Positives = 115/254 (45%), Gaps = 14/254 (5%)
Query: 10 DDRTVILCDQCEREFHVGCLRDSGRCDLKEIPKDNWFCSNDCHRIFAALQDFVSSGIQMI 69
+D C QCE ++HVGCLR L+ P FCS C +IF L + I
Sbjct: 409 EDNFKFSCHQCELQYHVGCLRKQRHVKLETYPDGTRFCSTQCEKIFLGLLKLLGKPI--- 465
Query: 70 PSLQLDIITRKHAEKGLLMDGLSNDVQWRILMGKSRRKEDLSLLSATAAIFRECFDPIV- 128
+ +D +T LL +S + K+ E S L+ + ECF+PI
Sbjct: 466 -PVGVDNLTWT-----LLKPTISEWFDMDVPDNKAL-TEVYSKLNIALNVMHECFEPIKE 518
Query: 129 AKTGRDLIPVMVY--GRNISGQEFGGMYCVLLLVKNVVVSAGLLRIFGREAAELPLVATS 186
TGRDL+ +++ G ++ F G Y VLL + ++S +R+ G + AE+PLV T
Sbjct: 519 PHTGRDLVEDVIFCRGSDLKRLNFRGFYIVLLERNDELISVATIRVHGEKVAEVPLVGTR 578
Query: 187 REHQGKGYFQALFSCIERLLCSXXXXXXXXPAAEEAESIWTRRFGFRKMSEGQLSKYTRE 246
+++ G + L + IE+ L PAA W FGF KM++ + + +
Sbjct: 579 SQYRRLGMCRILINEIEKKLVELGVERLTLPAAPSVLDTWVTSFGFSKMTDSERLTFL-D 637
Query: 247 LQVTIFKGTTMLEK 260
F+ T M +K
Sbjct: 638 YTFLDFQDTVMCQK 651
>GSVIVT01017972001 assembled CDS
Length = 1264
Score = 93.6 bits (231), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 71/261 (27%), Positives = 111/261 (42%), Gaps = 19/261 (7%)
Query: 6 TDIFDDRTV---ILCDQCEREFHVGCLRDSGRCDLKEIPKDNWFCSNDCHRIFAALQDFV 62
++ DD TV + C CE+++H C++ FC C +F LQ F+
Sbjct: 552 SNAEDDTTVSELVTCSLCEKKYHTSCIQGVDAVLSDTNNPSTSFCGQGCRELFEHLQKFI 611
Query: 63 SSGIQMIPSLQLDIITRKHAEKGLLMDGLSNDVQWRILMGKSRRKEDLSLLSATAAIFRE 122
++ +I R +D R G +R E S L+ + E
Sbjct: 612 GVKQELEAGFSWSLIHRTDP---------GSDTSVR---GFPQRVESNSKLAIALTVMDE 659
Query: 123 CFDPIVAKTGR-DLIPVMVYGR--NISGQEFGGMYCVLLLVKNVVVSAGLLRIFGREAAE 179
CF IV + +LI ++Y R N + + G Y +L + ++ A +RI G + AE
Sbjct: 660 CFLSIVDRRSEINLIHNVLYNRGSNFNRLNYSGFYTAILERGDEIICAASIRIHGTQLAE 719
Query: 180 LPLVATSREHQGKGYFQALFSCIERLLCSXXXXXXXXPAAEEAESIWTRRFGFRKMSEGQ 239
+P + T ++ +G + LF IE LCS PA E WT FGF + E
Sbjct: 720 MPFIGTRHIYRRQGMCRRLFCAIESALCSLKVEMLIIPAISELMHTWTVGFGFNPLEESH 779
Query: 240 LSKYTRELQVTIFKGTTMLEK 260
+ R L + +F GT ML+K
Sbjct: 780 KQEL-RSLNMLVFPGTDMLQK 799
>GSVIVT01001168001 assembled CDS
Length = 912
Score = 92.4 bits (228), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 66/263 (25%), Positives = 118/263 (44%), Gaps = 19/263 (7%)
Query: 3 DFSTDIFDDRTVILCDQCEREFHVGCLRDSGRCDLKEIPKDNWFCSNDCHRIFAALQDFV 62
+++ D+ +D ++ C CE ++H C + G + + FC C +F LQ +
Sbjct: 307 NYNLDV-NDSALLTCQLCEEKYHHMCTQ--GEDSILDDSSSPSFCGKTCRELFEQLQMLL 363
Query: 63 SSGIQMIPSLQLDIITRKHAEKGLLMDGLSNDVQWRILMGKSRRKEDLSLLSATAAIFRE 122
++ ++ R + ++G+ V+ S L+ +I E
Sbjct: 364 GVKHELEDGFSWTLVQRTEVGFDISLNGIPQKVECN------------SKLAVALSIMDE 411
Query: 123 CFDPIV-AKTGRDLIPVMVY--GRNISGQEFGGMYCVLLLVKNVVVSAGLLRIFGREAAE 179
CF PIV ++G +LI ++Y G N + + G + +L ++SA +RI G + AE
Sbjct: 412 CFLPIVDQRSGINLIHNVLYNCGSNFNRLNYSGFFTAILERGEEIISAASIRIHGNKLAE 471
Query: 180 LPLVATSREHQGKGYFQALFSCIERLLCSXXXXXXXXPAAEEAESIWTRRFGFRKMSEGQ 239
+P + T ++ +G + L + IE L S PA E WT FGF+ + E
Sbjct: 472 MPFIGTRHIYRRQGMCRRLLNAIESALHSLNVEKLVIPAISELMQTWTSVFGFKPL-EVS 530
Query: 240 LSKYTRELQVTIFKGTTMLEKEV 262
K R + + +F GT ML+K +
Sbjct: 531 SRKEMRNMNMLVFHGTDMLQKPL 553
>GSVIVT01004792001 assembled CDS
Length = 126
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 50/98 (51%), Gaps = 3/98 (3%)
Query: 111 SLLSATAAIFRECFDPIVAK-TGRDLIPVMVY--GRNISGQEFGGMYCVLLLVKNVVVSA 167
S ++ A+ ECF+P++ + T +++ ++Y G N F G Y +L + +S
Sbjct: 20 SKIAVAVAVMEECFEPVIDRHTQINVVRSVIYNCGANFPRISFEGFYTAILEKGDETISV 79
Query: 168 GLLRIFGREAAELPLVATSREHQGKGYFQALFSCIERL 205
+RI G + AE+P +AT ++ +G L IE +
Sbjct: 80 ASMRIHGNKLAEMPFIATRPSYRRQGMCHKLLVAIESV 117