Jatropha Genome Database

JcCB0003261.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0003261.20 - phase: 0 
         (441 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01018732001 assembled CDS                                       669   0.0  

>GSVIVT01018732001 assembled CDS
          Length = 456

 Score =  669 bits (1725), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 325/426 (76%), Positives = 351/426 (82%), Gaps = 11/426 (2%)

Query: 16  TLRSKNLPDFYLQLKNPNLISFRSERVGLPVLNSTXXXXXXXXXXXXQVMDQSVGEASSK 75
           +LRS  +    ++L    + + +  R+G  +  S+             VMDQS  + S +
Sbjct: 42  SLRSSFVSPIKIELNRVGVSALKVSRIGSRISASST-----------PVMDQSPSQTSPR 90

Query: 76  APTIVEVDLGNRSYPIYIGSGLLDQPELLQRHVHGKRVLVVTNNTVAPIYLDRVVDALTR 135
            PT+VEVDLGNRSYPIYIGSGLL QPELLQRHVHGKR LVVTN T+A +YLD+VVDALTR
Sbjct: 91  VPTVVEVDLGNRSYPIYIGSGLLQQPELLQRHVHGKRALVVTNTTIAALYLDKVVDALTR 150

Query: 136 GNPNVSVESVILPDGEKYKNMETLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAAS 195
           GNPN+SVESVILPDGEKYKNM+TLMKVFDKAIESRLDRRCTFVA+GGGVIGDMCG+AAA+
Sbjct: 151 GNPNISVESVILPDGEKYKNMDTLMKVFDKAIESRLDRRCTFVAVGGGVIGDMCGFAAAA 210

Query: 196 FLRGVNFIQIPTTVMAQVDSSVGGKTGINHRLGKNLIGAFYQPQCVLIDTDTLNTLPNRE 255
           FLRGVNFIQIPTTVMAQVDSSVGGKTGINH LGKNLIGAFYQPQCVLIDTDTLNTLP RE
Sbjct: 211 FLRGVNFIQIPTTVMAQVDSSVGGKTGINHPLGKNLIGAFYQPQCVLIDTDTLNTLPERE 270

Query: 256 LASGLAEVVKYGLIRDAEFFEWQEKNMPKLMARDPDALAYAIKRSCENKAEVVSLDEKES 315
           LASG AEV+KYGLIRDAEFFEWQEKNM  LMARDP ALAYAIKRSCENKAEVVSLDEKES
Sbjct: 271 LASGFAEVIKYGLIRDAEFFEWQEKNMQALMARDPGALAYAIKRSCENKAEVVSLDEKES 330

Query: 316 GLRATLNLGHTFGHAIETGFGYGQWLHGEXXXXXXXXXXXXSYRLGWIDDSIVKRVHNIL 375
           GLRATLNLGHTFGHAIETG GYGQWLHGE            SYRLGWIDDSIVKRVHNI+
Sbjct: 331 GLRATLNLGHTFGHAIETGVGYGQWLHGEAVAAGMVMAVDMSYRLGWIDDSIVKRVHNII 390

Query: 376 QQAKLPTAPPDTMTVEMFKSVMAVDKKVADXXXXXXXXXXXXXNCVFTGDYDRKALDDTL 435
           +QAKLP  PP++MTVEMFKSVMAVDKKVAD             NCVFTGDYDRKALDDTL
Sbjct: 391 KQAKLPITPPESMTVEMFKSVMAVDKKVADGLLRLILLKGPLGNCVFTGDYDRKALDDTL 450

Query: 436 RAFCKS 441
           RAF KS
Sbjct: 451 RAFAKS 456