Jatropha Genome Database

JcCB0003261.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0003261.10 - phase: 0 
         (215 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01018606001 assembled CDS                                       100   5e-22
GSVIVT01018608001 assembled CDS                                        97   5e-21
GSVIVT01018607001 assembled CDS                                        97   5e-21
GSVIVT01018598001 assembled CDS                                        97   8e-21
GSVIVT01018604001 assembled CDS                                        79   2e-15
GSVIVT01015019001 assembled CDS                                        49   1e-06

>GSVIVT01018606001 assembled CDS
          Length = 201

 Score =  100 bits (249), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 52/162 (32%), Positives = 83/162 (51%), Gaps = 2/162 (1%)

Query: 53  YLKTACKSTTYPKLCXXXXXXXXXIIKTDDLILCTTALNVSLQISINTSYFMTDLSNQQE 112
           +++T+C +TTYPKLC         +I+T   +L  TAL V+L  + +TS  M+ +     
Sbjct: 40  FIRTSCGTTTYPKLCYTSLSAHASVIQTSPKLLADTALAVTLSTARSTSSLMSKMVQSHG 99

Query: 113 LSETEAEVVQDCIDEIGDSIYELNQXXXXXXXXXXXXXXVRFQISNIKTWVSAAITDDYG 172
           L   E   + DC++E+ DS+ +L +                  +++I+TWVSAA+TD+  
Sbjct: 100 LKPREVAAMHDCVEELSDSVDQLRK--AMGEMTQIKGSNFGLMMNDIQTWVSAALTDEDT 157

Query: 173 CTDGFDGTXXXXXXXXXXXXXXLNVSRITSNALALVNQKLSF 214
           CTDGF G               +N++ +TSNAL L+N   S 
Sbjct: 158 CTDGFAGNAMNGNLKTTVRARVVNMAHMTSNALGLINSYASL 199


>GSVIVT01018608001 assembled CDS
          Length = 202

 Score = 97.1 bits (240), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 50/162 (30%), Positives = 81/162 (50%), Gaps = 2/162 (1%)

Query: 53  YLKTACKSTTYPKLCXXXXXXXXXIIKTDDLILCTTALNVSLQISINTSYFMTDLSNQQE 112
           +++T+C +TTYP+LC         +I+T   +L  TAL V+L  + +TS  M+ +     
Sbjct: 41  FIRTSCGTTTYPRLCYTSLSAHASVIQTSPKLLADTALAVTLSTARSTSSLMSKMVQSHG 100

Query: 113 LSETEAEVVQDCIDEIGDSIYELNQXXXXXXXXXXXXXXVRFQISNIKTWVSAAITDDYG 172
           L   E   + DC++E+ DS+ +L +                  + +I+TWVS A+TD+  
Sbjct: 101 LKPREVAAMHDCVEELSDSVDQLRR--AMGEMTQIKGSNFGLMMDDIQTWVSTALTDEDT 158

Query: 173 CTDGFDGTXXXXXXXXXXXXXXLNVSRITSNALALVNQKLSF 214
           CTDGF G               +N++ +TSNAL L+N   S 
Sbjct: 159 CTDGFAGNAMNGNLKTTVRARIVNMAHMTSNALGLINSYASL 200


>GSVIVT01018607001 assembled CDS
          Length = 202

 Score = 97.1 bits (240), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 50/162 (30%), Positives = 81/162 (50%), Gaps = 2/162 (1%)

Query: 53  YLKTACKSTTYPKLCXXXXXXXXXIIKTDDLILCTTALNVSLQISINTSYFMTDLSNQQE 112
           +++T+C +TTYP+LC         +I+T   +L  TAL V+L  + +TS  M+ +     
Sbjct: 41  FIRTSCGTTTYPRLCYTSLSAHASVIQTSPKLLADTALAVTLSTARSTSSLMSKMVQSHG 100

Query: 113 LSETEAEVVQDCIDEIGDSIYELNQXXXXXXXXXXXXXXVRFQISNIKTWVSAAITDDYG 172
           L   E   + DC++E+ DS+ +L +                  + +I+TWVS A+TD+  
Sbjct: 101 LKPREVAAMHDCVEELSDSVDQLRR--AMGEMTQIKGSNFGLMMDDIQTWVSTALTDEDT 158

Query: 173 CTDGFDGTXXXXXXXXXXXXXXLNVSRITSNALALVNQKLSF 214
           CTDGF G               +N++ +TSNAL L+N   S 
Sbjct: 159 CTDGFAGNAMNGNLKTTVRARIVNMAHMTSNALGLINSYASL 200


>GSVIVT01018598001 assembled CDS
          Length = 198

 Score = 96.7 bits (239), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 55/160 (34%), Positives = 79/160 (49%), Gaps = 1/160 (0%)

Query: 52  NYLKTACKSTTYPKLCXXXXXXXXXIIKTDDLILCTTALNVSLQISINTSYFMTDLSNQQ 111
           +++K  C +T YP LC          I+     L  TAL VSL  + +   F++ L   +
Sbjct: 34  SFIKAKCSATRYPALCVQSLSVYASTIQKSPKQLAHTALTVSLAKAQSAKAFVSKLGKIK 93

Query: 112 ELSETEAEVVQDCIDEIGDSIYELNQXXXXXXXXXXXXXX-VRFQISNIKTWVSAAITDD 170
            +   E E VQDC++E+ DSI  L++                 + +SN+ TWVSAA+TDD
Sbjct: 94  GMKARELEAVQDCLEEMNDSIDRLSRSVQELEEAGKSKGQDFLWHMSNVDTWVSAALTDD 153

Query: 171 YGCTDGFDGTXXXXXXXXXXXXXXLNVSRITSNALALVNQ 210
             C DGF G               + V+++TSNALALVNQ
Sbjct: 154 NTCVDGFAGRALDGRVKASIRGWLVTVAQVTSNALALVNQ 193


>GSVIVT01018604001 assembled CDS
          Length = 187

 Score = 78.6 bits (192), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 41/127 (32%), Positives = 71/127 (55%), Gaps = 2/127 (1%)

Query: 53  YLKTACKSTTYPKLCXXXXXXXXXIIKTDDLILCTTALNVSLQISINTSYFMTDLSNQQE 112
           +++T+C +T YP+LC         +I+T   +L  TAL+V+L  + +TS  M++L     
Sbjct: 39  FIRTSCGTTIYPRLCFTSLSAHANVIQTSPRLLADTALSVTLSTARSTSSVMSNLLLSHG 98

Query: 113 LSETEAEVVQDCIDEIGDSIYELNQXXXXXXXXXXXXXXVRFQISNIKTWVSAAITDDYG 172
           L   E   ++DC++E+ DS+ +L +              +   +++I+TWVSAA+T +  
Sbjct: 99  LKPREVVAMKDCVEELSDSVDQLRKAMGEMNQIKGSNFGL--IMNDIQTWVSAALTYEDT 156

Query: 173 CTDGFDG 179
           CTDGF G
Sbjct: 157 CTDGFAG 163


>GSVIVT01015019001 assembled CDS
          Length = 537

 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 58/132 (43%), Gaps = 14/132 (10%)

Query: 54  LKTACKSTTYPKLCXXXXXXXXXIIKTDDLILCTTALNVSLQISINT--SYFMTDLSN-- 109
           +K AC +T YP LC           K       TT L+  L+I++N   S  M   S+  
Sbjct: 62  IKNACTNTLYPSLCFTTLSSAPATSKN------TTTLHHILEIAVNATVSSVMDSGSDIK 115

Query: 110 ----QQELSETEAEVVQDCIDEIGDSIYELNQXXXXXXXXXXXXXXVRFQISNIKTWVSA 165
                Q+L+  E   + DC++    ++YEL Q                   +N+KT +SA
Sbjct: 116 ALFTYQDLNSQEKNALNDCMEMTDQTLYELGQAIDDLHAFPPSIGDPHRLYTNLKTLLSA 175

Query: 166 AITDDYGCTDGF 177
           A+T++  C DGF
Sbjct: 176 AMTNENTCIDGF 187