Jatropha Genome Database

JcCB0003071.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0003071.30 - phase: 0 
         (398 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01014834001 assembled CDS                                        62   4e-10

>GSVIVT01014834001 assembled CDS
          Length = 157

 Score = 62.0 bits (149), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 42/79 (53%)

Query: 209 PQKTRPITWLGAALCAIFWXXXXXXXXXXXXXXXXXRPRNPRFEVSSVTLNAAYIDADAL 268
           P++T P+ W  A LC IF                  +P+ P F++  V+L++ Y D+   
Sbjct: 28  PRRTNPMVWCCAILCLIFSLILIFFGIATLIIFLVIKPKTPLFDIPGVSLSSVYFDSPEY 87

Query: 269 LNADISLLANFTNPNKKVS 287
            N D + LANF+NPN+K++
Sbjct: 88  FNGDFTFLANFSNPNRKIN 106