Jatropha Genome Database

JcCB0002291.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0002291.10 - phase: 0 /partial
         (187 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01015331001 assembled CDS                                       163   4e-41
GSVIVT01013770001 assembled CDS                                        67   4e-12
GSVIVT01027582001 assembled CDS                                        49   2e-06

>GSVIVT01015331001 assembled CDS
          Length = 723

 Score =  163 bits (413), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 94/191 (49%), Positives = 114/191 (59%), Gaps = 13/191 (6%)

Query: 1   MALKLFPVQFPIFSPLLNPNPIQNPSQRPLFEVHFSRWNNANARKFNEQRRAQKEIEDDI 60
           MALK   + FPI +P        NPS RP  EV FSRWNNANA +F  + RAQKEIED+I
Sbjct: 1   MALKTL-IPFPILAP-------SNPSHRPASEVRFSRWNNANAERFTLRERAQKEIEDNI 52

Query: 61  RRQRRFDSATNIVQNYDSAT--KTTSTETFKXXXX--XXXXXXXXXXXRKSKYSKPKTHP 116
           RR+RRFDSAT I    D+ T  +  +  TFK                  K   +   +HP
Sbjct: 53  RRERRFDSATRIADIDDAGTSKEAAAAGTFKSTGTPSSPSKPSIPGKSSKYSKNSKTSHP 112

Query: 117 AFRRVSTRITQPKDDESPIERNANIKLSEDGLSYVVNGAPFEFKYSYTESPKVKPLKLRE 176
           AFR++S R   P  + SP E    I + EDG+SY+V G PFE +YSYTE+PKVKP+ LRE
Sbjct: 113 AFRQISRRTKLPGPNISP-EAKRGISIGEDGVSYMVPGVPFELRYSYTETPKVKPIALRE 171

Query: 177 PPFSPFGPTTM 187
           PPF PFGP TM
Sbjct: 172 PPFLPFGPDTM 182


>GSVIVT01013770001 assembled CDS
          Length = 561

 Score = 67.4 bits (163), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 37/81 (45%), Positives = 52/81 (64%), Gaps = 4/81 (4%)

Query: 110 SKPKTHPAFRRVSTRITQPK---DDESPIERNANIKLSEDGLSYVVNGAPFEFKYSYTES 166
           +KP T PAF+ V  R    K   D     + + ++ + E G+SY++ GAPFEF++SY+E+
Sbjct: 55  TKPPT-PAFKTVHHRSKYYKPVSDGVIASDGDRSVVIGESGVSYLLPGAPFEFQFSYSET 113

Query: 167 PKVKPLKLREPPFSPFGPTTM 187
           PK KPL +REP F PF P TM
Sbjct: 114 PKAKPLAIREPAFLPFAPPTM 134


>GSVIVT01027582001 assembled CDS
          Length = 418

 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 21/33 (63%), Positives = 27/33 (81%), Gaps = 1/33 (3%)

Query: 156 PFEFKYSYTES-PKVKPLKLREPPFSPFGPTTM 187
           PF+F+YSYTES P V+P+ LREP +SPFGP  +
Sbjct: 89  PFDFRYSYTESSPAVRPIGLREPKYSPFGPGLL 121