Jatropha Genome Database

JcCB0001721.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0001721.30 + phase: 0 
         (74 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01032166001 assembled CDS                                       118   6e-28

>GSVIVT01032166001 assembled CDS
          Length = 475

 Score =  118 bits (295), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 54/70 (77%), Positives = 59/70 (84%)

Query: 4  ETVNNVMCQLKDREGTALGAPLYLPQNAGPQQLMQIVNKLLNNEEKLPYSFYISDQELLV 63
          ET  NVMCQL D EG  LG P+YLPQNA P++L QIVNKLLNNEEKLPY+FYISDQEL+V
Sbjct: 8  ETGKNVMCQLTDPEGNHLGPPMYLPQNAAPKELQQIVNKLLNNEEKLPYAFYISDQELVV 67

Query: 64 PLETYLQKNK 73
           L TYLQKNK
Sbjct: 68 QLGTYLQKNK 77