Jatropha Genome Database

JcCB0001721.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0001721.10 + phase: 1 /partial
         (205 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01032163001 assembled CDS                                       363   e-101
GSVIVT01013726001 assembled CDS                                       199   5e-52
GSVIVT01013729001 assembled CDS                                       196   5e-51
GSVIVT01013732001 assembled CDS                                       195   1e-50
GSVIVT01013730001 assembled CDS                                       115   2e-26
GSVIVT01015722001 assembled CDS                                        68   3e-12
GSVIVT01014417001 assembled CDS                                        65   2e-11
GSVIVT01016218001 assembled CDS                                        61   4e-10
GSVIVT01026304001 assembled CDS                                        52   2e-07
GSVIVT01020812001 assembled CDS                                        50   8e-07

>GSVIVT01032163001 assembled CDS
          Length = 503

 Score =  363 bits (932), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 169/205 (82%), Positives = 191/205 (93%)

Query: 1   PCSPEKEFFIYAHERRGYYTFWQHMENAYPGSNILVVTLTNGESKRVEAQSDEETLKEAM 60
           PC P KEFFIYAHERRGY+TFWQHMENAYPGSNILVVTLTNGESKRVEAQSDEETLKEAM
Sbjct: 299 PCGPGKEFFIYAHERRGYFTFWQHMENAYPGSNILVVTLTNGESKRVEAQSDEETLKEAM 358

Query: 61  EVLRDMFGPNIPNATDILVPRWWNNRFQRGSYSNYPIISNNQVLHDIKSPVGRIFFTGEH 120
            VLRDMFGP+IPNATDILVP WWNNRFQRGSYSNYPIISN QV+++IK+P+GRIFF+GEH
Sbjct: 359 GVLRDMFGPDIPNATDILVPCWWNNRFQRGSYSNYPIISNPQVVNNIKAPLGRIFFSGEH 418

Query: 121 TSERFNGYVHGGYLSGIDTSKSLLEVMREEKGRKNESQTFLLEPLLALTGSLTLTQTEAV 180
           TSE+F+GYVHGGYL+GIDT+ SLLE MR+E  RK E+QTF+LEPLLALTGSLTL+QT+AV
Sbjct: 419 TSEKFSGYVHGGYLAGIDTADSLLEEMRKEAERKAENQTFMLEPLLALTGSLTLSQTDAV 478

Query: 181 SSLHKCDIPTQLYLSGKLGIPEAIL 205
           S+L+  DIP QL+L+ KLG+PEAIL
Sbjct: 479 SALNTFDIPRQLFLTSKLGMPEAIL 503


>GSVIVT01013726001 assembled CDS
          Length = 495

 Score =  199 bits (507), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 85/149 (57%), Positives = 114/149 (76%)

Query: 1   PCSPEKEFFIYAHERRGYYTFWQHMENAYPGSNILVVTLTNGESKRVEAQSDEETLKEAM 60
           P     EFF+YAHE+RGYYT WQ +E  YPGSN+L+VT+T+ ESKR+E Q D +T  E M
Sbjct: 335 PAGNGTEFFLYAHEKRGYYTIWQQLEREYPGSNVLLVTVTDDESKRIEQQPDSDTKAEVM 394

Query: 61  EVLRDMFGPNIPNATDILVPRWWNNRFQRGSYSNYPIISNNQVLHDIKSPVGRIFFTGEH 120
            VLR MFG NIP ATDILVPRWW+N+F +G++SN+PI  +      I++PVGR++FTGEH
Sbjct: 395 GVLRAMFGKNIPEATDILVPRWWSNKFYKGTFSNWPIGVSRFEFDQIRAPVGRVYFTGEH 454

Query: 121 TSERFNGYVHGGYLSGIDTSKSLLEVMRE 149
           TS+ +NGYVHG YL+GID++  L+  +++
Sbjct: 455 TSQHYNGYVHGAYLAGIDSANILIPCIKK 483


>GSVIVT01013729001 assembled CDS
          Length = 505

 Score =  196 bits (499), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 86/148 (58%), Positives = 111/148 (75%)

Query: 1   PCSPEKEFFIYAHERRGYYTFWQHMENAYPGSNILVVTLTNGESKRVEAQSDEETLKEAM 60
           P     EFF YAHE+RGYYT WQ +E  YPG+N L+VT+T+ ES+R+E Q D +T  E M
Sbjct: 345 PTGNGTEFFFYAHEKRGYYTIWQQLEEEYPGANFLLVTVTDDESRRIEQQPDSDTKAEIM 404

Query: 61  EVLRDMFGPNIPNATDILVPRWWNNRFQRGSYSNYPIISNNQVLHDIKSPVGRIFFTGEH 120
            VLR MFG NI  ATD+LVPRWW+++F RGSYSN+PI  +      I++PVGR++FTGEH
Sbjct: 405 GVLRAMFGKNISEATDVLVPRWWSDKFYRGSYSNWPIGVSRLEYDRIRAPVGRVYFTGEH 464

Query: 121 TSERFNGYVHGGYLSGIDTSKSLLEVMR 148
           TSE FNGYVHG YL+GID++K L+  ++
Sbjct: 465 TSEYFNGYVHGAYLAGIDSAKMLIRCVK 492


>GSVIVT01013732001 assembled CDS
          Length = 489

 Score =  195 bits (495), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 85/148 (57%), Positives = 112/148 (75%)

Query: 1   PCSPEKEFFIYAHERRGYYTFWQHMENAYPGSNILVVTLTNGESKRVEAQSDEETLKEAM 60
           P     EFF+YAHE+RGYY FWQH+E  +PG N+L+VT+T+ ES+R+E QSD ET  E M
Sbjct: 334 PSGNGTEFFLYAHEKRGYYPFWQHLEREFPGENVLLVTVTDDESRRLEQQSDSETKAEIM 393

Query: 61  EVLRDMFGPNIPNATDILVPRWWNNRFQRGSYSNYPIISNNQVLHDIKSPVGRIFFTGEH 120
            VLR+MFG  IP ATDILVPRW +NRF +GSYSN+PI  ++   + IK+PVG+++FTGEH
Sbjct: 394 AVLRNMFGKQIPEATDILVPRWLSNRFFKGSYSNWPIGVSHHQFNQIKAPVGKVYFTGEH 453

Query: 121 TSERFNGYVHGGYLSGIDTSKSLLEVMR 148
           TS  + GYVHG Y +GIDT+K +   ++
Sbjct: 454 TSAAYYGYVHGAYFAGIDTAKLMTSCIK 481


>GSVIVT01013730001 assembled CDS
          Length = 91

 Score =  115 bits (287), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 48/84 (57%), Positives = 63/84 (75%)

Query: 66  MFGPNIPNATDILVPRWWNNRFQRGSYSNYPIISNNQVLHDIKSPVGRIFFTGEHTSERF 125
           MFG  IP ATDILVPRWW+NRF +GSYSN+PI   +   + IK+PVGR++FTGEHTS  +
Sbjct: 1   MFGKQIPEATDILVPRWWSNRFYKGSYSNWPIGVGHHQFNQIKAPVGRVYFTGEHTSAAY 60

Query: 126 NGYVHGGYLSGIDTSKSLLEVMRE 149
            GYVHG Y +GID++K +   ++ 
Sbjct: 61  YGYVHGAYFAGIDSAKMITNCIKR 84


>GSVIVT01015722001 assembled CDS
          Length = 669

 Score = 67.8 bits (164), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 71/137 (51%), Gaps = 7/137 (5%)

Query: 15  RRGYYTFWQHMENAYPGSNILVVTLTNGESKRVEAQSDEETLKEAMEVLRDMFGPN---I 71
           R  ++ F+ +  ++  G  +LV  +    +   E  S  E ++  +++L+ +F P    +
Sbjct: 484 RGEFFLFYSY--SSVSGGPLLVALVAGEAAINFEMMSPVEAVRRVLDILKGIFNPKGIAV 541

Query: 72  PNATDILVPRWWNNRFQRGSYSNYPIISNNQVLHDIKSPVG--RIFFTGEHTSERFNGYV 129
           P+   ++  RW  +RF  GSYS   I S+      +   VG  R+FF GE T++++   +
Sbjct: 542 PDPIQVVCTRWGKDRFTYGSYSYVAIGSSGDDYDILAESVGDGRVFFAGEATNKQYPATM 601

Query: 130 HGGYLSGIDTSKSLLEV 146
           HG +LSG+  + ++L V
Sbjct: 602 HGAFLSGMREAANILRV 618


>GSVIVT01014417001 assembled CDS
          Length = 667

 Score = 65.1 bits (157), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 76/147 (51%), Gaps = 12/147 (8%)

Query: 12  AHERRGYYTFWQ-HMENAYPGSNILVVTLTNGESKRVEAQSDEETL-KEAMEVLRDMFGP 69
           +H+R  ++ F+  H  +  P    ++V L  GE+ +    +D  TL    + +LR ++ P
Sbjct: 396 SHKRGEFFLFYSYHTVSGGP----VLVALVAGEAAQAFEYTDPSTLLHRVLNILRGIYTP 451

Query: 70  ---NIPNATDILVPRWWNNRFQRGSYSNYPIISNNQVLHDI--KSPVGRIFFTGEHTSER 124
              N+PN    +  RW ++    GSYS+  + S+    +DI  +S  GR+FF GE T+ +
Sbjct: 452 KGINVPNPIQTICTRWGSDPLSYGSYSHVRVRSSGSD-YDILAESVAGRLFFAGEATNRQ 510

Query: 125 FNGYVHGGYLSGIDTSKSLLEVMREEK 151
           +   +HG +LSG+  +  +L   R  +
Sbjct: 511 YPASMHGAFLSGLREASCILGATRSHQ 537


>GSVIVT01016218001 assembled CDS
          Length = 934

 Score = 60.8 bits (146), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 35/135 (25%), Positives = 69/135 (51%), Gaps = 8/135 (5%)

Query: 15  RRG-YYTFWQHMENAYPGSNILVVTLTNGESKRVEAQSDEETLKEAMEVLRDMFGP---N 70
           RRG ++ F+ +   A  G  +L+  +    + + E+    + +   +++LR ++ P   N
Sbjct: 496 RRGEFFLFYSYATVA--GGPLLIALVAGEAAHKFESMPPTDAVTWVIQILRGIYEPQGIN 553

Query: 71  IPNATDILVPRWWNNRFQRGSYSNYPIISNNQVLHDIKSPVG--RIFFTGEHTSERFNGY 128
           +P     +  RW ++ F  GSYSN  + ++      +   VG  R+FF GE T+ R+   
Sbjct: 554 VPEPIQTVCTRWGSDPFSLGSYSNVAVGASGDDYDILAENVGDGRLFFAGEATTRRYPAT 613

Query: 129 VHGGYLSGIDTSKSL 143
           +HG +LSG+  + ++
Sbjct: 614 MHGAFLSGLREAANM 628


>GSVIVT01026304001 assembled CDS
          Length = 490

 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/169 (24%), Positives = 66/169 (39%), Gaps = 21/169 (12%)

Query: 24  HMENAYPGSNILVVTLTNGESKRVEAQSDEETLKEAMEVLRDMFGPNIPNATDILVPRWW 83
           H    YP   ILV       +  +E  SDE  +   M  L+ MF P+       LV RW 
Sbjct: 340 HKATGYP---ILVYMTAGSSACGLEKLSDECAVNFVMLQLKKMF-PDATKPVQYLVSRWG 395

Query: 84  NNRFQRGSYSNYPIISNNQVLHDIKSPVGRIFFTGEHTSERFNGYVHGGYLSGIDTSKSL 143
            +    G Y++  +         +  P+  +FF GE  S    G VHG Y +GI  +++ 
Sbjct: 396 TDPNSLGCYAHDVVGKPEDSYERLLEPLDNLFFGGEAVSLDHQGSVHGAYSAGIMAAENC 455

Query: 144 LEVMREEKGRKNESQTFLLEPLLALTGSLTLTQTEAVSSLHKCDIPTQL 192
              + E +G   + Q   L                  S++H+  +P Q+
Sbjct: 456 QRYILERRGNLEKLQLVSLR-----------------SAIHEAAVPLQI 487


>GSVIVT01020812001 assembled CDS
          Length = 490

 Score = 50.1 bits (118), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 48/104 (46%), Gaps = 1/104 (0%)

Query: 33  NILVVTLTNGESKRVEAQSDEETLKEAMEVLRDMFGPNIPNATDILVPRWWNNRFQRGSY 92
           ++LV       +K +E  SDE     A   L+ +  P   +    LV RW  +    GSY
Sbjct: 348 SVLVYMPAGQLAKDIEKMSDEAAANFAFMQLKKIL-PEASDPIQYLVSRWGTDENSLGSY 406

Query: 93  SNYPIISNNQVLHDIKSPVGRIFFTGEHTSERFNGYVHGGYLSG 136
           +   +   + +   ++ PV  +FF GE TS  + G VHG + +G
Sbjct: 407 TYDAVGKPHDLYERLRVPVDNLFFAGEATSVNYPGSVHGAFSTG 450