Jatropha Genome Database

JcCB0001411.50
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0001411.50 - phase: 0 /pseudo/partial
         (196 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01037705001 assembled CDS                                       186   5e-48

>GSVIVT01037705001 assembled CDS
          Length = 397

 Score =  186 bits (472), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 87/125 (69%), Positives = 105/125 (84%), Gaps = 1/125 (0%)

Query: 72  RLLSAGSRITCKDFNEKVVKGEAHVLVDVRPAHHFKIVALPNALNIPLTSLEARLPEISS 131
            LL A SRIT K++N+++V GEAHVLVDVRP+HHF IV+LP +LNIPL+SLE R+ EISS
Sbjct: 274 NLLPADSRITSKEYNDRLVNGEAHVLVDVRPSHHFNIVSLPKSLNIPLSSLETRMSEISS 333

Query: 132 ALKEAGGCRGTESESGVSLYIVCRRGNDSQRAVQMLHSKGFTSAKDIIGGLEAWSHDVDP 191
           ALKE    +G+ + SG S+Y+VCRRGNDSQRAV+ LH  GFTSAKDIIGGLE+W+HDVDP
Sbjct: 334 ALKEEEEQKGS-NHSGTSIYVVCRRGNDSQRAVEYLHKIGFTSAKDIIGGLESWAHDVDP 392

Query: 192 KFPTY 196
            FPTY
Sbjct: 393 NFPTY 397