Jatropha Genome Database

JcCB0001411.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0001411.30 + phase: 0 /partial
         (229 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01013236001 assembled CDS                                       132   1e-31
GSVIVT01028484001 assembled CDS                                        90   9e-19
GSVIVT01030374001 assembled CDS                                        84   7e-17
GSVIVT01002019001 assembled CDS                                        65   2e-11

>GSVIVT01013236001 assembled CDS
          Length = 217

 Score =  132 bits (332), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 71/164 (43%), Positives = 101/164 (61%), Gaps = 10/164 (6%)

Query: 62  LAIEASSWLSNRLPVAWFIYLLLVIGASLIVISCFGCVGAATRSSCCLCTYSVLLVLLFI 121
           +A+  SS + + LP AWFIY    IG  L VISCFGCVGA TR+ CCL  Y+VL++LL +
Sbjct: 1   MAVTLSSSILDNLPKAWFIYCFFAIGVILFVISCFGCVGAVTRNGCCLSCYAVLVILLIL 60

Query: 122 AQLVAAAFMFFNHNRQKDMPNDRSGSFNSTYRFFTLNWKIIRWVIIAALALKVIGLVVAL 181
            +L  AAF+FF+ + + D+P D++G F+  Y F   NWKI++WV +AA+ L+ +  V+ L
Sbjct: 61  IELGCAAFIFFDKSWEDDIPTDKTGDFDMIYDFLKENWKIVKWVALAAVILEALLFVLTL 120

Query: 182 YLRYANRVNDYE----------RIVYPEIVRPTAEKRGNPVAAA 215
            +R AN+ +DY+           +  P I RP     G PVA A
Sbjct: 121 MVRAANKPDDYDSDDEFIAQRQSVRQPLINRPPVAATGVPVAGA 164


>GSVIVT01028484001 assembled CDS
          Length = 274

 Score = 89.7 bits (221), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 49/155 (31%), Positives = 80/155 (51%), Gaps = 2/155 (1%)

Query: 73  RLPVAWFIYLLLVIGASLIVISCFGCVGAATRSSCCLCTYSVLLVLLFIAQLVAAAFMFF 132
           +LP  WFIY  + +G  +  I+C G + A   + CCLC Y++L VLL + +    AF+ F
Sbjct: 96  KLPAPWFIYSFMGVGIVVCCITCIGHIAAEAINGCCLCFYTMLTVLLILLEAGLIAFVAF 155

Query: 133 NHNRQKDMPNDRSGSFNSTYRFFTLNWKIIRWVIIAALALKVIGLVVALYLR--YANRVN 190
           +H+ +KD+P D +G   +   F   N  I +WV I  ++++ + L++A+ LR   + R  
Sbjct: 156 DHHWEKDLPFDPTGELENFRSFIEGNIDICKWVGITVVSIQALSLLLAMILRAMVSTRKT 215

Query: 191 DYERIVYPEIVRPTAEKRGNPVAAATSTGRKEQTR 225
           DY+            E   NP A+ TS   K   +
Sbjct: 216 DYDIEDDYTAAGRNREPLLNPQASQTSGSSKGDGK 250


>GSVIVT01030374001 assembled CDS
          Length = 212

 Score = 83.6 bits (205), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 79/149 (53%), Gaps = 9/149 (6%)

Query: 78  WFIYLLLVIGASLIVISCFGCVGAATRSSCCLCTYSVLLVLLFIAQLVAAAFMFFNHNRQ 137
           WFIY  L +GA+L + +CFG   A T + CCL  Y + +  L I +    A +F NH+ +
Sbjct: 51  WFIYTFLGLGATLCLFTCFGHAAAETANGCCLYVYMMYIFFLLILEAGVTADVFLNHDWE 110

Query: 138 KDMPNDRSGSFNSTYRFFTLNWKIIRWVIIAALALKVIGLVVALYLR------YANRVND 191
           +D P D +GSF+    F   N++I +W+ ++ L ++ + +++A+ L+      Y +  ++
Sbjct: 111 EDFPEDPTGSFHEFKNFVRSNFEICKWIGLSILFVQGLSILLAMVLKALGPHQYYDSDDE 170

Query: 192 YERIVYPEI---VRPTAEKRGNPVAAATS 217
           Y     P +   V P     G+P + + +
Sbjct: 171 YAPTRAPLLRNAVHPPPYVAGDPFSGSRT 199


>GSVIVT01002019001 assembled CDS
          Length = 211

 Score = 65.1 bits (157), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 76/164 (46%), Gaps = 22/164 (13%)

Query: 25  AIEFYGIFCLVNWKNDRESHSHNNSKKYEQIALPRALLAIEASSWLSNRLPVAWFIYLLL 84
            I  YG++ +  W+ D +  S   S  +E    P                   WFI+  +
Sbjct: 26  TIILYGLWMMRVWQRDMQGTS---SDSFEPPHFP-------------------WFIWASI 63

Query: 85  VIGASLIVISCFGCVGAATRSSCCLCTYSVLLVLLFIAQLVAAAFMFFNHNRQKDMPNDR 144
           + G S  VI+  G + A T +  CL  Y V+LV L + +   AA +F N + +KD+P D 
Sbjct: 64  ITGISFCVITSIGHIAADTVNGHCLSCYMVILVSLLLLETALAADIFLNSDWEKDLPEDP 123

Query: 145 SGSFNSTYRFFTLNWKIIRWVIIAALALKVIGLVVALYLRYANR 188
           +G F+    F   N ++ +W+ +  +  + I +++A+ LR   R
Sbjct: 124 TGRFDDFKDFVNSNIEMFQWIGLLIVLAQGISILLAMVLRTTER 167