Jatropha Genome Database

JcCB0001131.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0001131.20 + phase: 2 /partial
         (572 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01018452001 assembled CDS                                      1023   0.0  
GSVIVT01011700001 assembled CDS                                       673   0.0  

>GSVIVT01018452001 assembled CDS
          Length = 614

 Score = 1023 bits (2645), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 495/559 (88%), Positives = 525/559 (93%)

Query: 14  EGIKINSVPTKPIDGQKTGTSGLRKKVKVFMEENYLANWIQALFNSLPAEDYKNGLLVLG 73
           + IKI S+PTKPI+GQKTGTSGLRKKVKVF+EENYLANWIQALFNSLP EDYK+G+LVLG
Sbjct: 56  QTIKIISMPTKPIEGQKTGTSGLRKKVKVFIEENYLANWIQALFNSLPPEDYKDGVLVLG 115

Query: 74  GDGRYFNKEXXXXXXXXXXGNGVGKILVGKEGIMSTPAVSAVIRKREANGGFIMSASHNP 133
           GDGRYFN+E          GNGVGKILVGKEGIMSTPAVSAVIRK++ANGGFIMSASHNP
Sbjct: 116 GDGRYFNREAAQIIIKIAAGNGVGKILVGKEGIMSTPAVSAVIRKQKANGGFIMSASHNP 175

Query: 134 GGPEYDWGIKFNYSSGQPAPESITDKIYGNTLSISEIKIAEIPDVDLSRLGVTKYGNFIV 193
           GGPEYDWGIKFNYSSGQPAPE+ITDKIYGNTLSISEIK+ +IPD+DLS LGVT YGNF V
Sbjct: 176 GGPEYDWGIKFNYSSGQPAPETITDKIYGNTLSISEIKMVDIPDIDLSCLGVTTYGNFSV 235

Query: 194 EVVDPVSDYLELMENVFDFELIRSLVSRSDFRFIFDAMHAVTGAYAKPIFVDKLGASLDS 253
           EVVDPVSDYLEL+ENVFDF+LI+ L+SRSDFRF FDAMHAVTGAYAKPIFVDKLGAS DS
Sbjct: 236 EVVDPVSDYLELLENVFDFQLIKGLLSRSDFRFTFDAMHAVTGAYAKPIFVDKLGASPDS 295

Query: 254 ISNGVPLEDFGHGHPDPNLTYAKDLVKIMYSENGPDFGAASDGDGDRNMILGKEFFVTPS 313
           ISNGVPLEDFGHGHPDPNLTYAKDLV IMY  NGPDFGAASDGDGDRNMILG+ FFVTPS
Sbjct: 296 ISNGVPLEDFGHGHPDPNLTYAKDLVNIMYGVNGPDFGAASDGDGDRNMILGRSFFVTPS 355

Query: 314 DSVAIIAANAQGAIPYFKSGPKGLARSMPTSGALDRVAEKLSLPFFEVPTGWKFFGNLMD 373
           DSVAIIAANAQ AIPYF+SGPKGLARSMPTSGALDRVAEKL+LPFFEVPTGWKFFGNLMD
Sbjct: 356 DSVAIIAANAQEAIPYFQSGPKGLARSMPTSGALDRVAEKLTLPFFEVPTGWKFFGNLMD 415

Query: 374 AGKLSICGEESFGTGSDHIREKDGIWAVLAWLSIIAHRNKDKKLGDKLVSVADVVKEHWA 433
           AGKLSICGEESFGTGSDHIREKDGIWAVLAWLSIIA+RNKDKK G+KL SVADVVKEHWA
Sbjct: 416 AGKLSICGEESFGTGSDHIREKDGIWAVLAWLSIIAYRNKDKKPGEKLASVADVVKEHWA 475

Query: 434 TYGRNFFSRYDYEECESEGANKMIEYLRDLASKSKPGEKYGSYVLQCADDFKYTDPVDGS 493
           TYGRNFFSRYDYEECESEGANKMIEYLRDL SKSK GEKYG+Y LQ ADDF YTDPVDGS
Sbjct: 476 TYGRNFFSRYDYEECESEGANKMIEYLRDLVSKSKAGEKYGNYALQFADDFSYTDPVDGS 535

Query: 494 MVSKQGVRFIFTDGSRIIFRLSGTGSAGATVRMYIEQFEPDVSKHELDAQTALKPLIDLA 553
           + SKQGVRF+FTDGSRII+RLSGTGSAGATVR+YIEQFEPDVSKHE+DAQ ALKPLIDLA
Sbjct: 536 VASKQGVRFVFTDGSRIIYRLSGTGSAGATVRIYIEQFEPDVSKHEMDAQAALKPLIDLA 595

Query: 554 LSVSKLKEFTGREKPTVIT 572
           LS+SKLK+FTGREKPTVIT
Sbjct: 596 LSLSKLKDFTGREKPTVIT 614


>GSVIVT01011700001 assembled CDS
          Length = 583

 Score =  673 bits (1737), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/579 (58%), Positives = 425/579 (73%), Gaps = 23/579 (3%)

Query: 17  KINSVPTKPIDGQKTGTSGLRKKVKVFMEENYLANWIQALFNSLPAEDYKNGLLVLGGDG 76
           K++ V T P DGQK GTSGLRKKVKVF ++NYL N++Q+ FN+L  +  +   LV+ GDG
Sbjct: 5   KVSRVTTSPFDGQKPGTSGLRKKVKVFKQQNYLHNFVQSTFNALSQDKIRGMTLVVSGDG 64

Query: 77  RYFNKEXXXXXXXXXXGNGVGKILVGKEGIMSTPAVSAVIRKR------EANGGFIMSAS 130
           RYF+K+           NGV  + VG+ G++STPAVSAVIR+R      +A+G FI++AS
Sbjct: 65  RYFSKDAIQIIIKMAAANGVRSVWVGQNGLLSTPAVSAVIRERVGKDGTKASGAFILTAS 124

Query: 131 HNPGGPEYDWGIKFNYSSGQPAPESITDKIYGNTLSISEIKIAE-IPDVDLSRLGVTKY- 188
           HNPGGP  D+GIK+N  +G PA E+ITDKIY NT SI E  IAE +PDVD+S +G+T + 
Sbjct: 125 HNPGGPNEDFGIKYNMENGGPAQEAITDKIYENTKSIKEYIIAEDLPDVDISAIGITNFT 184

Query: 189 ---GNFIVEVVDPVSDYLELMENVFDFELIRSLVSRSDFRFIFDAMHAVTGAYAKPIFVD 245
              G F VEV D   DY++LM+++FDF+ I+ L+S   F F +DA+H V GAYAK IFV+
Sbjct: 185 GPEGQFDVEVFDSAFDYVKLMKSIFDFQSIQKLLSSPKFTFCYDALHGVGGAYAKRIFVE 244

Query: 246 KLGASLDSISNGVPLEDFGHGHPDPNLTYAKDLVKIM------YSENGPDFGAASDGDGD 299
           +LGA   S+ N VP EDFG GHPDPNLTYAK+LV  M           P+FGAASDGD D
Sbjct: 245 ELGAQESSLLNCVPKEDFGGGHPDPNLTYAKELVACMGLGKSDAKNEPPEFGAASDGDAD 304

Query: 300 RNMILGKEFFVTPSDSVAIIAANAQGAIPYFKSGPKGLARSMPTSGALDRVAEKLSLPFF 359
           RNMILGK FFVTPSDSVAIIAANA  AIPYF +G KG+ARSMPTS ALD VA+ L+L FF
Sbjct: 305 RNMILGKRFFVTPSDSVAIIAANAVDAIPYFSAGLKGVARSMPTSAALDVVAKHLNLKFF 364

Query: 360 EVPTGWKFFGNLMDAGKLSICGEESFGTGSDHIREKDGIWAVLAWLSIIAHRNKDKKLGD 419
           EVPTGWKFFGNLMDAG  SICGEESFGTGSDHIREKDGIWAVLAWLSI+A+ NK+   G 
Sbjct: 365 EVPTGWKFFGNLMDAGLCSICGEESFGTGSDHIREKDGIWAVLAWLSILAYENKENLGGA 424

Query: 420 KLVSVADVVKEHWATYGRNFFSRYDYEECESEGANKMIEYLRDLAS------KSKPGEKY 473
           KLV+V ++V+ HWATYGR++++RYDYE  ++  A +++ YL  L S      K   G   
Sbjct: 425 KLVTVEEIVRNHWATYGRHYYTRYDYENVDAGAAKELMAYLVKLQSSLPEVNKIIKGIHS 484

Query: 474 GSYVLQCADDFKYTDPVDGSMVSKQGVRFIFTDGSRIIFRLSGTGSAGATVRMYIEQFEP 533
               +  AD+F+Y DPVDGS+   QG+R++F DGSR+IFRLSGTGS GAT+R+YIEQ+E 
Sbjct: 485 DVSNVAKADEFEYKDPVDGSISKHQGIRYMFEDGSRLIFRLSGTGSEGATIRVYIEQYEK 544

Query: 534 DVSKHELDAQTALKPLIDLALSVSKLKEFTGREKPTVIT 572
           D SK   D+Q AL PL+++AL +SK++EFTGR  PTVIT
Sbjct: 545 DSSKTGRDSQEALGPLVEVALKLSKMQEFTGRSAPTVIT 583