Jatropha Genome Database

JcCB0001101.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0001101.20 + phase: 0 
         (78 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01024232001 assembled CDS                                        96   3e-21
GSVIVT01024535001 assembled CDS                                        95   8e-21

>GSVIVT01024232001 assembled CDS
          Length = 72

 Score = 96.3 bits (238), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 44/51 (86%), Positives = 47/51 (92%)

Query: 1  MGKQPVRMKAVVYALSPFQQKIMPGLWKDLPNKIHHKVSENWISATLLLTP 51
          MGK PVRMKAVVY+LSPFQQ+IMPGLWKDL  KIHHKV+ENWISATLLL P
Sbjct: 1  MGKTPVRMKAVVYSLSPFQQQIMPGLWKDLTTKIHHKVTENWISATLLLAP 51


>GSVIVT01024535001 assembled CDS
          Length = 72

 Score = 94.7 bits (234), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 43/51 (84%), Positives = 47/51 (92%)

Query: 1  MGKQPVRMKAVVYALSPFQQKIMPGLWKDLPNKIHHKVSENWISATLLLTP 51
          MGK PVRMKAVVY+LSPFQQ+IMPGLWKDL  KIHHKV++NWISATLLL P
Sbjct: 1  MGKTPVRMKAVVYSLSPFQQQIMPGLWKDLTTKIHHKVTDNWISATLLLAP 51