Jatropha Genome Database

JcCB0001101.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0001101.10 + phase: 0 /partial
         (281 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01024534001 assembled CDS                                       456   e-129
GSVIVT01029865001 assembled CDS                                       449   e-127
GSVIVT01014762001 assembled CDS                                       282   2e-76
GSVIVT01023231001 assembled CDS                                       274   3e-74
GSVIVT01014212001 assembled CDS                                        99   3e-21
GSVIVT01026752001 assembled CDS                                        96   2e-20
GSVIVT01025406001 assembled CDS                                        50   1e-06

>GSVIVT01024534001 assembled CDS
          Length = 281

 Score =  456 bits (1172), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 225/282 (79%), Positives = 250/282 (88%), Gaps = 2/282 (0%)

Query: 1   MSGLYAQNFSPARTLSPHIRTTPDVESGQYLTELLEEHQKLGPFARVLPICSRLLNQEIL 60
           MSGLY QNFS AR LSPHIRT PDVES QYLTELL E+QKL PF +VLP+CSRLLNQEIL
Sbjct: 1   MSGLYTQNFSSARALSPHIRTAPDVES-QYLTELLAEYQKLVPFMQVLPVCSRLLNQEIL 59

Query: 61  RVSGMLPNQGLSDFDRPQRGSLNLMASSDILPNNRGTGFLGWNGLQNERLGS-QGINMDW 119
           RVS M+P QG  DFDR QRGS + + SS+++PN RGT   GWNGL +ERLG  QG+ MDW
Sbjct: 60  RVSSMIPKQGFGDFDRLQRGSPSPLGSSEMMPNIRGTSLGGWNGLPHERLGGPQGMTMDW 119

Query: 120 QAAPASPSAYIVKKILRLDIPVDSYPNFNFVGRLLGPRGNSLKRVEASTGCRVYIRGKGS 179
           QA P SPS+YIVKKILRL+IPVDSYPNFNFVGRLLGPRGNSLKRVEASTGCRVYIRGKGS
Sbjct: 120 QAPPGSPSSYIVKKILRLEIPVDSYPNFNFVGRLLGPRGNSLKRVEASTGCRVYIRGKGS 179

Query: 180 IKDPEKEESLRGRPGYEHLSDPLHILIEGELPVNIIDMQLRQAQEIIEELLKPVDESQDI 239
           IKDP+KEE LRGRPGYEHL+DPL+ILIE ELPV+I+D+QLR+AQEIIEELLKPVDES D 
Sbjct: 180 IKDPDKEEELRGRPGYEHLNDPLYILIEAELPVSIVDVQLRRAQEIIEELLKPVDESHDF 239

Query: 240 YKRQQLRELAMLNSNYREESPRPSGSISPFTSSGMKRAKTGQ 281
           YKRQQLRELA+LNSN+REESP+P GS SPF+SSGMKRAKTG+
Sbjct: 240 YKRQQLRELALLNSNFREESPQPRGSASPFSSSGMKRAKTGR 281


>GSVIVT01029865001 assembled CDS
          Length = 281

 Score =  449 bits (1156), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 220/282 (78%), Positives = 247/282 (87%), Gaps = 2/282 (0%)

Query: 1   MSGLYAQNFSPARTLSPHIRTTPDVESGQYLTELLEEHQKLGPFARVLPICSRLLNQEIL 60
           MSGLY  NFSPAR +SP IR+TPDV+S QYL+ELL EHQKLGPF +VLPICSRLLNQEI+
Sbjct: 1   MSGLYNHNFSPARAVSPQIRSTPDVDS-QYLSELLAEHQKLGPFMQVLPICSRLLNQEII 59

Query: 61  RVSGMLPNQGLSDFDRPQRGSLNLMASSDILPNNRGTGFLGWNGLQNERL-GSQGINMDW 119
           RVSGM+ NQG  DFDR Q  S + MASS+++ N  GTG  GWNGL  ERL G  G+ MDW
Sbjct: 60  RVSGMISNQGFGDFDRLQHRSPSPMASSNLMSNVSGTGLGGWNGLPQERLSGPHGMTMDW 119

Query: 120 QAAPASPSAYIVKKILRLDIPVDSYPNFNFVGRLLGPRGNSLKRVEASTGCRVYIRGKGS 179
           Q APASPS+Y VK+ILRL+IPVD+YPNFNFVGRLLGPRGNSLKRVEA+TGCRVYIRGKGS
Sbjct: 120 QGAPASPSSYTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGS 179

Query: 180 IKDPEKEESLRGRPGYEHLSDPLHILIEGELPVNIIDMQLRQAQEIIEELLKPVDESQDI 239
           IKDPEKE+ LRGRPGYEHL+DPLHILIE +LP NI+DM+LRQAQEIIEELLKPVDESQD 
Sbjct: 180 IKDPEKEDKLRGRPGYEHLNDPLHILIEADLPANIVDMRLRQAQEIIEELLKPVDESQDF 239

Query: 240 YKRQQLRELAMLNSNYREESPRPSGSISPFTSSGMKRAKTGQ 281
            KRQQLRELA+LNSN+REESP PSGS+SPF +SGMKRAKTG+
Sbjct: 240 IKRQQLRELALLNSNFREESPGPSGSVSPFNTSGMKRAKTGR 281


>GSVIVT01014762001 assembled CDS
          Length = 287

 Score =  282 bits (721), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 153/287 (53%), Positives = 193/287 (67%), Gaps = 13/287 (4%)

Query: 2   SGLYAQNFSPARTLSPHI--------RTTPDVESGQYLTELLEEHQKLGPFARVLPICSR 53
           SG Y   +SP+ + +PH          T+  VE  +YL+ELL E  KL PF  VLP   R
Sbjct: 3   SGRY-MAYSPSPSTAPHSPHIAGLRSATSALVEQEKYLSELLAERHKLSPFMPVLPHSYR 61

Query: 54  LLNQEILRVSGMLPNQGLSDFDRPQRGSLNLMASSDILPNNRGTGFLGWNGLQNERLGSQ 113
           LLNQEILRV+ +L N  + D    +  S   +AS  I  N  G    GW       +   
Sbjct: 62  LLNQEILRVTTLLGNASILDQSGLEHASP--LASGGIFSNG-GANVNGWASPFQSEMSGL 118

Query: 114 GINMDWQAAPASPSAYIVKKILRLDIPVDSYPNFNFVGRLLGPRGNSLKRVEASTGCRVY 173
               +W  +  S S  IVK+ +R+DIPV+ +P++NFVGRLLGPRGNSLKR+EA+T CRV 
Sbjct: 119 SAAQNWLGSQGSSSGLIVKRTIRVDIPVEKFPSYNFVGRLLGPRGNSLKRMEATTECRVL 178

Query: 174 IRGKGSIKDPEKEESLRGRPGYEHLSDPLHILIEGELPVNIIDMQLRQAQEIIEELLKPV 233
           IRG+GSIKDP +EE +RG+PGYEHL++PLHIL+E ELPV I+D +L QA+EI+E+LLKPV
Sbjct: 179 IRGRGSIKDPAREEMMRGKPGYEHLNEPLHILVEAELPVEIVDARLMQAREILEDLLKPV 238

Query: 234 DESQDIYKRQQLRELAMLNSNYREESPRPSGSISPFTSS-GMKRAKT 279
           DESQD +K+QQLRELAMLN   REE    SGS+SPF +S GMKRAKT
Sbjct: 239 DESQDFFKKQQLRELAMLNGTLREEGSHMSGSVSPFHNSLGMKRAKT 285


>GSVIVT01023231001 assembled CDS
          Length = 295

 Score =  274 bits (701), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 155/291 (53%), Positives = 194/291 (66%), Gaps = 22/291 (7%)

Query: 2   SGLYAQNFSPARTLSPHIRTTPDVESGQYLTELLEEHQKLGPFARVLPICSRLLNQEILR 61
           SGL+A         SPH  ++   +  +YL ELL E QKLGPF ++LP CSRLLNQEI R
Sbjct: 16  SGLHA---------SPHRSSSLSSDRERYLAELLAEKQKLGPFMQILPQCSRLLNQEIRR 66

Query: 62  VSGMLPNQGLSDFDRPQRGSLNLMASSDILPNNRGTGFLGWNGLQNERLGS-------QG 114
           +S + PNQG  D +R +  S     S    PN       GW  +Q E  G        Q 
Sbjct: 67  LSAIAPNQGFVDLERIEHDSP--FRSLGQHPNGGPMDLEGWPAMQTEENGPLRRMAPFQA 124

Query: 115 INMDWQAAPASPSAYIVKKILRLDIPVDSYPNFNFVGRLLGPRGNSLKRVEASTGCRVYI 174
            ++ W  AP  P+  +VK+++RLD+PVD YPN+NFVGR+LGPRGNSLKRVEA T CRVYI
Sbjct: 125 SSLGWHRAPGIPTTPVVKRVIRLDVPVDKYPNYNFVGRILGPRGNSLKRVEAMTECRVYI 184

Query: 175 RGKGSIKDPEKEESLRGRPGYEHLSDPLHILIEGELPVNIIDMQLRQAQEIIEELLKPVD 234
           RG+GS+KD  KEE L+ +PGYEHL++PLH+L+E E   +II+ +L QA  I+E LLKPVD
Sbjct: 185 RGQGSVKDAVKEEKLKDKPGYEHLNEPLHVLVEAEFSEDIINSRLEQAVAILENLLKPVD 244

Query: 235 ESQDIYKRQQLRELAMLNSNYREE----SPRPSGSISPFTSSGMKRAKTGQ 281
           ES D YK+QQLRELAMLN   REE    SP  S S+SPF ++GMKRAKTG+
Sbjct: 245 ESLDQYKKQQLRELAMLNGTLREESPSMSPSMSPSMSPFNTAGMKRAKTGR 295


>GSVIVT01014212001 assembled CDS
          Length = 271

 Score = 98.6 bits (244), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 76/210 (36%), Positives = 112/210 (53%), Gaps = 16/210 (7%)

Query: 55  LNQEILRVSGMLPNQGLSDFDRPQRGSLNLMASSDILPNNRGTGFLGWNGLQNERLGSQG 114
           LN  +L +S ML   GL   DRP+        S + + +N G           ERL  + 
Sbjct: 17  LNSRLLEISRML-QSGLPLDDRPEGAR---SPSPEPIYDNMGIRINTREYRARERLNRER 72

Query: 115 ---INMDWQAAPA--SPSAYIVKKI-LRLDIPVDSYPNFNFVGRLLGPRGNSLKRVEAST 168
              I+   +  PA   P+ Y   K+  +L IP+  YP +NF+G ++GPRGN+ KR+E  T
Sbjct: 73  QEIISQILKRNPAFKPPADYRPPKLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMERET 132

Query: 169 GCRVYIRGKGSIKDPEKEESLRGRPGYEHLSDPLHILIEGELPVNIIDMQLRQAQEIIEE 228
           G ++ IRGKGS+K+   ++    +P      D LH+L+E +         L  A  ++E+
Sbjct: 133 GAKIVIRGKGSVKEGRLQQKRDLKPDPSENED-LHVLVEAD-----TQEALDAAAGMVEK 186

Query: 229 LLKPVDESQDIYKRQQLRELAMLNSNYREE 258
           LL+PVDE  + +KRQQLRELA LN   R+E
Sbjct: 187 LLQPVDEVLNEHKRQQLRELAALNGTIRDE 216


>GSVIVT01026752001 assembled CDS
          Length = 63

 Score = 95.9 bits (237), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 44/55 (80%), Positives = 50/55 (90%)

Query: 131 VKKILRLDIPVDSYPNFNFVGRLLGPRGNSLKRVEASTGCRVYIRGKGSIKDPEK 185
           +K+IL L+IP+D+YPNFNFVG LLG RGNSLKRVEA TGC VYIRGKGSIKDP+K
Sbjct: 1   MKRILCLEIPIDTYPNFNFVGWLLGLRGNSLKRVEAITGCCVYIRGKGSIKDPKK 55


>GSVIVT01025406001 assembled CDS
          Length = 886

 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 20/44 (45%), Positives = 29/44 (65%)

Query: 133 KILRLDIPVDSYPNFNFVGRLLGPRGNSLKRVEASTGCRVYIRG 176
           K  R+ IPV  YP +NF+G + GP  ++LKR+E  TG +V + G
Sbjct: 178 KEARVPIPVKEYPGYNFIGLIFGPGSDTLKRLEKETGAKVQVYG 221