Jatropha Genome Database

JcCB0000571.50
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0000571.50 - phase: 0 /pseudo/partial
         (181 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01013506001 assembled CDS                                        57   4e-09
GSVIVT01030585001 assembled CDS                                        52   1e-07
GSVIVT01013538001 assembled CDS                                        51   3e-07

>GSVIVT01013506001 assembled CDS
          Length = 423

 Score = 57.4 bits (137), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 44/143 (30%), Positives = 69/143 (48%), Gaps = 22/143 (15%)

Query: 9   FVNGAMHWITYKSKNNNEREFFIMVFDLRDEVFGEIMLPQ---SLVISSC--DFKVHVFG 63
           F+NGA+HW+  K    +  +  I+ FD+  +VF EIMLP      +I  C  D+K     
Sbjct: 222 FINGALHWLAGKKNEMDNTDNLILSFDMAKDVFKEIMLPDFGYDELIRKCLADYK----- 276

Query: 64  ESSITVIHKKDKKMSVVC---VMKNYGVVASWVMLGTVGKDWRGKLRVL---GFMSNGDV 117
             S++V+       +  C   VM+ YGV  SW    T+    R ++ ++    F  NG+ 
Sbjct: 277 -GSLSVLFYDAYHSNENCDVWVMEEYGVAKSWTKHFTI----RHEIEIIIPFEFFDNGEA 331

Query: 118 FLQFHR-GGIASQNIESRRLKNL 139
            LQ  + GG  S N +  R ++L
Sbjct: 332 ILQKKKSGGFISWNPDGIRFRDL 354


>GSVIVT01030585001 assembled CDS
          Length = 423

 Score = 52.4 bits (124), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 68/135 (50%), Gaps = 5/135 (3%)

Query: 9   FVNGAMHWITY-KSKNNNEREFFIMVFDLRDEVFGEIMLPQSLVISSCDFKVHVFGESSI 67
           FVNGA+HW+   K++   + +  I+ FD+ ++   E++LP+     S   K     +  +
Sbjct: 225 FVNGALHWLAAKKNQGRGKSDDLILSFDMVEDNLREMILPEFGYDESSTQKCLADYKGLL 284

Query: 68  TVIHKKDKKMSVVC---VMKNYGVVASWVMLGTVGKDWRGKLRVLGFMSNGDVFLQFHRG 124
           +V+     + +  C   VM  YGV +SW    T   D    L +L F+ NG+V +Q   G
Sbjct: 285 SVLVYNAHRCNDNCDIWVMDEYGVASSWTKRFTFCLDVE-ILILLDFLDNGEVVVQNKNG 343

Query: 125 GIASQNIESRRLKNL 139
           G+ + +    ++++L
Sbjct: 344 GLVACDPNGGKIRDL 358


>GSVIVT01013538001 assembled CDS
          Length = 711

 Score = 50.8 bits (120), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 41/130 (31%), Positives = 59/130 (45%), Gaps = 19/130 (14%)

Query: 9   FVNGAMHWITYKSKNNNEREFFIMV-FDLRDEVFGEIMLPQSLVISSCDFKVHVFGES-S 66
           + NG +HW+ ++     E E   MV F LR+E F E+ LP    +    F + V G    
Sbjct: 196 YFNGNLHWLAFRYGGYGEDERSSMVAFSLREEKFQEMELPSQRAV----FGLRVLGGCLC 251

Query: 67  ITVIHKKDKKMSVVCVMKNYGVVASWVMLGTV------GKDWRGKLRVLGFMSNGDVFLQ 120
           +  ++  DK      VM+ YG+  SW  L  +      G  W+   RVL F+ NG V L 
Sbjct: 252 VDGLYTNDK-----WVMEEYGIKESWKSLIAIPYRVGDGSSWKLP-RVLRFLENG-VLLV 304

Query: 121 FHRGGIASQN 130
            H G   + N
Sbjct: 305 LHDGKFRNTN 314