Jatropha Genome Database
- JcCB0000571.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0000571.10 + phase: 2 /TE/partial
(245 letters)
Database: grape_pep_20100319
26,346 sequences; 9,959,944 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
GSVIVT01000641001 assembled CDS 179 1e-45
GSVIVT01009548001 assembled CDS 169 1e-42
GSVIVT01012382001 assembled CDS 132 1e-31
GSVIVT01031724001 assembled CDS 101 4e-22
GSVIVT01013655001 assembled CDS 95 3e-20
GSVIVT01028343001 assembled CDS 93 1e-19
GSVIVT01031819001 assembled CDS 86 2e-17
GSVIVT01026124001 assembled CDS 82 3e-16
GSVIVT01013341001 assembled CDS 79 2e-15
GSVIVT01015960001 assembled CDS 56 1e-08
GSVIVT01028763001 assembled CDS 55 4e-08
GSVIVT01019138001 assembled CDS 51 4e-07
>GSVIVT01000641001 assembled CDS
Length = 947
Score = 179 bits (454), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 98/230 (42%), Positives = 144/230 (62%), Gaps = 4/230 (1%)
Query: 8 EEMEKIPYASAVGSLMYALVCTRPDIAHSVGVVSRFLSNPGKEHWAAVKWIFRYLRGTTK 67
++++ I Y VGSLMY L TRPDI HSV ++SR++ NP + H+ A K I RYL+GT
Sbjct: 229 KKVDSIIYKQIVGSLMY-LTATRPDIMHSVSLISRYMENPTELHFLAAKKICRYLQGTKD 287
Query: 68 VCLCFGE-EKPVLVGYTDADMAGDVDSRKSTSGYLITFAGGAVSWQSRLQKCVALSTTEA 126
L + + ++ L+G+TD+D AGD D+R+STSGY+ GAVSW S+ Q V LSTTEA
Sbjct: 288 FGLFYKKGKRSDLIGFTDSDYAGDQDNRRSTSGYVFMLGTGAVSWSSKKQPIVTLSTTEA 347
Query: 127 EFIALTEACKELLWMKKFLNELGIHQE-RYLIFCDSQSAIHLGKNSSFHSRSKHIDVRYH 185
EF+A T + +W++K L EL + Q IFCD+ S I L KN H RSKHIDV+Y+
Sbjct: 348 EFVAATVCACQAIWLRKILEELHLKQVGATTIFCDNSSTIKLSKNPVLHGRSKHIDVKYY 407
Query: 186 WIRDVLEMKQLQLEKIHTDENGSDMLTKILPKDKF-EYCRLAAGMMESMA 234
++RD+ + L ++ +D+ TK L F E ++ +++S++
Sbjct: 408 FLRDLSNDGVIDLVYCRSENQVADIFTKPLKLAVFLELRKVTKTILQSLS 457
>GSVIVT01009548001 assembled CDS
Length = 849
Score = 169 bits (428), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 83/219 (37%), Positives = 136/219 (62%), Gaps = 4/219 (1%)
Query: 1 PSTNGEKEEMEKIPYASAVGSLMYALVCTRPDIAHSVGVVSRFLSNPGKEHWAAVKWIFR 60
P + EK+ M+ IPYASA+GSLMYA C RP+I V V+ R+LSN G+ HW A K + R
Sbjct: 582 PKNDLEKDAMKAIPYASAIGSLMYAQACIRPNIVFIVNVLGRYLSNLGQYHWVAAKKVMR 641
Query: 61 YLRGTTKVCLCFGEEKPV-LVGYTDADMAGDVDSRKSTSGYLITFAGGAVSWQSRLQKCV 119
YL+ T L + + +VGY+++D G D KSTSGY+ GGA+SW+S Q +
Sbjct: 642 YLQRTNDFMLVYRRVDNLEVVGYSNSDFNGCSDDCKSTSGYIFMLTGGAISWKSVKQSLI 701
Query: 120 ALSTTEAEFIALTEACKELLWMKKFLNELGIHQERY---LIFCDSQSAIHLGKNSSFHSR 176
A ST A+F+A A +++W++K ++EL + + +I+CD+ + + KN+ +
Sbjct: 702 AFSTMYAKFVACYGASSQVVWLRKLISELQVVDSIFRPIVIYCDNNATVFYSKNNKISTS 761
Query: 177 SKHIDVRYHWIRDVLEMKQLQLEKIHTDENGSDMLTKIL 215
SKH++++Y ++D+++ + + ++ I T+ +D LTK L
Sbjct: 762 SKHMEIKYLIVKDLVKKEDIVIKHIRTESMLADPLTKGL 800
>GSVIVT01012382001 assembled CDS
Length = 952
Score = 132 bits (333), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 69/200 (34%), Positives = 112/200 (56%), Gaps = 2/200 (1%)
Query: 37 VGVVSRFLSNPGKEHWAAVKWIFRYLRGTTKVCLCFGEEKPV-LVGYTDADMAGDVDSRK 95
V +VS+++ P H VK I RYL+ T + ++G++D+D AG+ R+
Sbjct: 751 VSLVSQYMHAPTVVHLCMVKRILRYLKKTIGRGIVMRRNGHTDIIGFSDSDWAGNTIDRR 810
Query: 96 STSGYLITFAGGAVSWQSRLQKCVALSTTEAEFIALTEACKELLWMKKFLNELGIHQERY 155
ST+GY + G VSW+S+ Q VA S+ EAE+ A+ A E++W+K L +LG
Sbjct: 811 STTGYCMFVGGNLVSWKSKKQPVVARSSAEAEYRAMAAASCEMVWLKNLLTDLGFSPTSP 870
Query: 156 L-IFCDSQSAIHLGKNSSFHSRSKHIDVRYHWIRDVLEMKQLQLEKIHTDENGSDMLTKI 214
+ +FCD+Q+A+H+ N FH R+KHI+V H+IR ++ K +Q I + + +D TK+
Sbjct: 871 MKLFCDNQAAMHIAANPVFHERTKHIEVDCHFIRQQVQSKVIQTHYIRSSDQLADAFTKV 930
Query: 215 LPKDKFEYCRLAAGMMESMA 234
L F G ++ +A
Sbjct: 931 LSSTVFHRLMFKLGSIDPLA 950
>GSVIVT01031724001 assembled CDS
Length = 1135
Score = 101 bits (251), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 55/135 (40%), Positives = 78/135 (57%), Gaps = 2/135 (1%)
Query: 15 YASAVGSLMYALVCTRPDIAHSVGVVSRFLSNPGKEHWAAVKWIFRYLRGTTKVCLCFGE 74
Y S VG+L Y + TRPDIA+++ +F+ P H AVK + RYL+G+ L F
Sbjct: 990 YRSLVGALQYCTI-TRPDIAYTINKFFQFMHAPTSTHLQAVKRVLRYLKGSLFYGLSFQP 1048
Query: 75 EKPV-LVGYTDADMAGDVDSRKSTSGYLITFAGGAVSWQSRLQKCVALSTTEAEFIALTE 133
+ L+ YTDAD A D R+ST+GY I F G +SW + QK V+ S+ E+++ L
Sbjct: 1049 SSSLDLIAYTDADGASCPDDRRSTNGYCIFFRGNLISWSASKQKVVSRSSIESKYRGLAN 1108
Query: 134 ACKELLWMKKFLNEL 148
A EL W++ L EL
Sbjct: 1109 ATIELTWIQSLLKEL 1123
>GSVIVT01013655001 assembled CDS
Length = 4396
Score = 94.7 bits (234), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 48/130 (36%), Positives = 75/130 (57%), Gaps = 2/130 (1%)
Query: 40 VSRFLSNPGKEHWAAVKWIFRYLRGTTKVCLCFGEEKPV-LVGYTDADMAGDVDSRKSTS 98
+S+F+ P +HW AVK + RYL GT + P+ L ++D+D AG+ D STS
Sbjct: 4258 LSQFMHQPTSDHWNAVKRLLRYLCGTLDHGITLRRTSPLALHAFSDSDWAGNKDDFTSTS 4317
Query: 99 GYLITFAGGAVSWQSRLQKCVALSTTEAEFIALTEACKELLWMKKFLNELGIH-QERYLI 157
Y+I +SW S+ Q+ VA S+TEAE+ ++ E+ W+ L ELG+ ++ +I
Sbjct: 4318 AYIIYLGHNPISWSSKKQRTVARSSTEAEYRSVASTAAEIRWICSLLTELGVTLPQQPVI 4377
Query: 158 FCDSQSAIHL 167
+CD+ A HL
Sbjct: 4378 YCDNVGATHL 4387
>GSVIVT01028343001 assembled CDS
Length = 2295
Score = 92.8 bits (229), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 79/131 (60%), Gaps = 1/131 (0%)
Query: 94 RKSTSGYLITFAGGAVSWQSRLQKCVALSTTEAEFIALTEACKELLWMKKFLNELGI-HQ 152
R+STSGY + G +SW+S+ Q VA S+ EAE+ A+ A EL+W++ L EL
Sbjct: 1467 RRSTSGYCVFIGGNLISWKSKKQDVVARSSAEAEYRAMALATCELIWLRHLLQELRFGKD 1526
Query: 153 ERYLIFCDSQSAIHLGKNSSFHSRSKHIDVRYHWIRDVLEMKQLQLEKIHTDENGSDMLT 212
E+ + CD+Q+A+H+ N FH R+KHI+V H+IR+ + + +++++ +D+ T
Sbjct: 1527 EQMKLICDNQAALHIASNPVFHERTKHIEVDCHFIREKIASGCVATSFVNSNDQLADIFT 1586
Query: 213 KILPKDKFEYC 223
K L + +Y
Sbjct: 1587 KSLRGPRIKYI 1597
>GSVIVT01031819001 assembled CDS
Length = 149
Score = 85.5 bits (210), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 40/82 (48%), Positives = 56/82 (68%)
Query: 51 HWAAVKWIFRYLRGTTKVCLCFGEEKPVLVGYTDADMAGDVDSRKSTSGYLITFAGGAVS 110
H+ AVKW+ RYL+GTTK C CF + L GY D D + ++D+ KST GY+ T A+S
Sbjct: 68 HYEAVKWMLRYLQGTTKNCPCFRRGELKLQGYVDIDFSNEIDNWKSTIGYVFTLGTTAIS 127
Query: 111 WQSRLQKCVALSTTEAEFIALT 132
W S+LQK V LST + +++A+T
Sbjct: 128 WISQLQKIVVLSTIKVKYVAMT 149
>GSVIVT01026124001 assembled CDS
Length = 1018
Score = 81.6 bits (200), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 40/86 (46%), Positives = 58/86 (67%)
Query: 138 LLWMKKFLNELGIHQERYLIFCDSQSAIHLGKNSSFHSRSKHIDVRYHWIRDVLEMKQLQ 197
++W+ L+EL QE ++ DS SAI L KNS FHS+SKHI +YH+IR ++E K +
Sbjct: 1 MIWLHGLLDELAKKQEMRILHSDSHSAIFLAKNSVFHSKSKHIQTKYHFIRYLIEDKLVI 60
Query: 198 LEKIHTDENGSDMLTKILPKDKFEYC 223
LEKI+ +N +DMLTK + +K + C
Sbjct: 61 LEKIYGSKNPADMLTKGVTIEKLKLC 86
>GSVIVT01013341001 assembled CDS
Length = 503
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 63/108 (58%), Gaps = 1/108 (0%)
Query: 44 LSNPGKEHWAAVKWIFRYLRGTTKVCLCFGEEKPVLV-GYTDADMAGDVDSRKSTSGYLI 102
+ +P + H V I +YL+GT + L FG+ + +TDAD AG ++ R+STSGY
Sbjct: 1 MHSPYEAHMNVVYKILQYLKGTPRKGLHFGKHDQFKIEAFTDADWAGSIEDRRSTSGYCT 60
Query: 103 TFAGGAVSWQSRLQKCVALSTTEAEFIALTEACKELLWMKKFLNELGI 150
G ++W+S+ Q VA S+ E +F ++ E+LW+K+ L EL I
Sbjct: 61 FVFGNLITWRSKKQNVVARSSAEVKFRSIAHGICEVLWIKRVLEELKI 108
>GSVIVT01015960001 assembled CDS
Length = 1205
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 55/94 (58%), Gaps = 1/94 (1%)
Query: 139 LWMKKFLNELGIHQERYL-IFCDSQSAIHLGKNSSFHSRSKHIDVRYHWIRDVLEMKQLQ 197
+W+++ L EL + + ++CD+++ I + N H R+KH++V H+I++ ++ +
Sbjct: 1 MWIRRLLEELKMTGSSPMKLYCDNKAVISVAYNPVLHDRTKHVEVDKHFIKEKIDNGLVC 60
Query: 198 LEKIHTDENGSDMLTKILPKDKFEYCRLAAGMME 231
+ I T+E +D+ TK L K +F++ L + E
Sbjct: 61 MTYIPTEEQVADVFTKGLHKRQFDFLCLCVNLAE 94
>GSVIVT01028763001 assembled CDS
Length = 297
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 33/43 (76%)
Query: 98 SGYLITFAGGAVSWQSRLQKCVALSTTEAEFIALTEACKELLW 140
+GY+ T G V+W S+LQK V LSTTEAE++ +T+A KE++W
Sbjct: 64 AGYIYTLGGTTVNWISKLQKIVLLSTTEAEYVVVTDANKEMMW 106
>GSVIVT01019138001 assembled CDS
Length = 149
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 41/66 (62%), Gaps = 1/66 (1%)
Query: 142 KKFLNELGIHQERYLIFCDSQSAIHLGKNSSFHSRSKHIDVRYHWIRDVLEMKQLQLEKI 201
K F G + YL+ CD++SAI + KN FHSR++HI V+YH+I++ + ++QL
Sbjct: 4 KNFRRHQGEDEATYLL-CDNKSAIAIAKNYVFHSRTRHIAVKYHFIKEAISDGEVQLMYC 62
Query: 202 HTDENG 207
+ +N
Sbjct: 63 YICKNN 68